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Image processing operations for SciJava Ops.
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/*-
* #%L
* Image processing operations for SciJava Ops.
* %%
* Copyright (C) 2014 - 2024 SciJava developers.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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* this list of conditions and the following disclaimer.
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* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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package org.scijava.ops.image.morphology;
import java.util.List;
import net.imglib2.Interval;
import net.imglib2.IterableInterval;
import net.imglib2.RandomAccessible;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.algorithm.morphology.BlackTopHat;
import net.imglib2.algorithm.neighborhood.Shape;
import net.imglib2.img.Img;
import net.imglib2.type.numeric.RealType;
import org.scijava.function.Computers;
import org.scijava.function.Functions;
import org.scijava.function.Inplaces;
/**
* Wrapper Ops for imglib2-algorithm's Black Top Hats algorithms TODO: Revert to
* the nice lambda syntax with all of the List ops once imglib2-algorithm
* reaches a new version.
*
* @author Gabriel Selzer
* @param
* @param
*/
public class BlackTopHats & Comparable, R extends RealType> {
/**
* Iteratively performs Black Top Hats with each passed {@link Shape} in
* order.
*
* @input img input data
* @input shapes a {@code List} containing the {@link Shape}s to use
* for each Black Top Hat neighborhood
* @input numThreads the number of threads to use in the execution
* @output img output data
* @implNote op names='morphology.BlackTopHat'
*/
@SuppressWarnings("unchecked")
public final Functions.Arity3
, List extends Shape>, Integer, Img> BlackTopHatImgList =
BlackTopHat::blackTopHat;
/**
* Performs a Black Top Hat.
*
* @input img input data
* @input shape a {@link Shape} to use for the neighborhood
* @input numThreads the number of threads to use in the execution
* @output img output data
* @implNote op names='morphology.BlackTopHat'
*/
public final Functions.Arity3
, Shape, Integer, Img> BlackTopHatImgSingle =
BlackTopHat::blackTopHat;
/**
* Iteratively performs Black Top Hats with each passed {@link Shape} in
* order.
*
* @input img input data
* @input shapes a {@code List} containing the {@link Shape}s to use
* for each Black Top Hat neighborhood
* @input numThreads the number of threads to use in the execution
* @input minValue a {@link T} that is smaller than all values in the input
* image. Used to speed computation.
* @input maxValue a {@link T} that is larger than all values in the input
* image. Used to speed computation.
* @output img output data
* @implNote op names='morphology.BlackTopHat'
*/
@SuppressWarnings("unchecked")
public final Functions.Arity5
, List extends Shape>, T, T, Integer, Img> BlackTopHatImgListMinMax =
BlackTopHat::blackTopHat;
/**
* Performs a Black Top Hat.
*
* @input img input data
* @input shape a {@link Shape} to use for the neighborhood
* @input numThreads the number of threads to use in the execution
* @input minValue a {@link T} that is smaller than all values in the input
* image. Used to speed computation.
* @input maxValue a {@link T} that is larger than all values in the input
* image. Used to speed computation.
* @output img output data
* @implNote op names='morphology.BlackTopHat'
*/
public final Functions.Arity5
, Shape, T, T, Integer, Img> BlackTopHatImgSingleMinMax =
BlackTopHat::blackTopHat;
/**
* Iteratively performs Black Top Hats with each passed {@link Shape} in
* order, placing the result into the provided preallocated output buffer.
*
* @input img input data
* @input shapes a {@code List} containing the {@link Shape}s to use
* for each Black Top Hat neighborhood
* @input numThreads the number of threads to use in the execution
* @container img output data
* @implNote op names='morphology.BlackTopHat'
*/
@SuppressWarnings("unchecked")
public final Computers.Arity3, List extends Shape>, Integer, IterableInterval> BlackTopHatImgListComputer =
(in1, in2, in3, out) -> BlackTopHat.blackTopHat(in1, out, in2, in3);
/**
* Iteratively performs Black Top Hats with each passed {@link Shape} in
* order, placing the result into the provided preallocated output buffer.
*
* @input img input data
* @input shapes a {@code List} containing the {@link Shape}s to use
* for each Black Top Hat neighborhood
* @input numThreads the number of threads to use in the execution
* @input minValue a {@link T} that is smaller than all values in the input
* image. Used to speed computation.
* @input maxValue a {@link T} that is larger than all values in the input
* image. Used to speed computation.
* @container img output data
* @implNote op names='morphology.BlackTopHat'
*/
@SuppressWarnings("unchecked")
public final Computers.Arity5, List extends Shape>, T, T, Integer, IterableInterval> BlackTopHatImgListMinMaxComputer =
(in1, in2, in3, in4, in5, out) -> BlackTopHat.blackTopHat(in1, out, in2,
in3, in4, in5);
/**
* Performs a Black Top Hat, placing the result into the provided preallocated
* output buffer.
*
* @input img input data
* @input shape a {@link Shape} to use for the neighborhood
* @input numThreads the number of threads to use in the execution
* @container img output data
* @implNote op names='morphology.BlackTopHat'
*/
public final Computers.Arity3, Shape, Integer, IterableInterval> BlackTopHatImgComputer =
(in1, in2, in3, out) -> BlackTopHat.blackTopHat(in1, out, in2, in3);
/**
* Performs a Black Top Hat, placing the result into the provided preallocated
* output buffer.
*
* @input img input data
* @input shape a {@link Shape} to use for the neighborhood
* @input numThreads the number of threads to use in the execution
* @input minValue a {@link T} that is smaller than all values in the input
* image. Used to speed computation.
* @input maxValue a {@link T} that is larger than all values in the input
* image. Used to speed computation.
* @container img output data
* @implNote op names='morphology.BlackTopHat'
*/
public final Computers.Arity5, Shape, T, T, Integer, IterableInterval> BlackTopHatImgMinMaxComputer =
(in1, in2, in3, in4, in5, out) -> BlackTopHat.blackTopHat(in1, out, in2,
in3, in4, in5);
/**
* Iteratively performs Black Top Hats within the provided
* {@link Interval} with each passed {@link Shape} in order, overwriting
* the provided input buffer with the results
*
* @mutable img input data
* @input interval the {@link Interval} restricting the bounds of computation.
* @input shapes a {@code List} containing the {@link Shape}s to use
* for each Black Top Hat neighborhood
* @input numThreads the number of threads to use in the execution
* @implNote op names='morphology.BlackTopHat'
*/
@SuppressWarnings("unchecked")
public final Inplaces.Arity4_1, Interval, List extends Shape>, Integer> BlackTopHatImgListInPlace =
(io, in2, in3, in4) -> BlackTopHat.blackTopHatInPlace(io, in2,
(List) in3, in4);
/**
* Iteratively performs Black Top Hats within the provided
* {@link Interval} with each passed {@link Shape} in order, overwriting
* the provided input buffer with the results
*
* @mutable img input data
* @input interval the {@link Interval} restricting the bounds of computation.
* @input shapes a {@code List} containing the {@link Shape}s to use
* for each Black Top Hat neighborhood
* @input numThreads the number of threads to use in the execution
* @input minValue a {@link T} that is smaller than all values in the input
* image. Used to speed computation.
* @input maxValue a {@link T} that is larger than all values in the input
* image. Used to speed computation.
* @implNote op names='morphology.BlackTopHat'
*/
@SuppressWarnings("unchecked")
public final Inplaces.Arity6_1, Interval, List extends Shape>, T, T, Integer> BlackTopHatImgListMinMaxInplace =
(io, in2, in3, in4, in5, in6) -> BlackTopHat.blackTopHatInPlace(io, in2,
(List) in3, in4, in5, in6);
/**
* Performs a Black Top Hat within the provided {@link Interval},
* overwriting the provided input buffer with the results
*
* @mutable img input data
* @input interval the {@link Interval} restricting the bounds of computation.
* @input shape a {@link Shape} to use for the neighborhood
* @input numThreads the number of threads to use in the execution
* @implNote op names='morphology.BlackTopHat'
*/
public final Inplaces.Arity4_1, Interval, Shape, Integer> BlackTopHatImgSingleInPlace =
BlackTopHat::blackTopHatInPlace;
/**
* Performs a Black Top Hat within the provided {@link Interval},
* overwriting the provided input buffer with the results
*
* @mutable img input data
* @input interval the {@link Interval} restricting the bounds of computation.
* @input shape a {@link Shape} to use for the neighborhood
* @input numThreads the number of threads to use in the execution
* @input minValue a {@link T} that is smaller than all values in the input
* image. Used to speed computation.
* @input maxValue a {@link T} that is larger than all values in the input
* image. Used to speed computation.
* @implNote op names='morphology.BlackTopHat'
*/
public final Inplaces.Arity6_1, Interval, Shape, T, T, Integer> BlackTopHatImgSingleMinMaxInplace =
BlackTopHat::blackTopHatInPlace;
}
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