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Image processing operations for SciJava Ops.
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/*
* #%L
* Image processing operations for SciJava Ops.
* %%
* Copyright (C) 2014 - 2024 SciJava developers.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package org.scijava.ops.image.stats;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.type.numeric.RealType;
import org.scijava.function.Computers;
import org.scijava.ops.spi.Op;
import org.scijava.ops.spi.OpDependency;
/**
* Op to calculate the {@code stats.geometricMean} using {@code stats.size} and
* {@code stats.sumOfLogs}.
*
* @author Daniel Seebacher (University of Konstanz)
* @author Christian Dietz (University of Konstanz)
* @param input type
* @param output type
* @implNote op names='stats.geometricMean'
*/
public class DefaultGeometricMean, O extends RealType>
implements Computers.Arity1, O>
{
@OpDependency(name = "stats.size")
private Computers.Arity1, O> sizeComputer;
@OpDependency(name = "stats.sumOfLogs")
private Computers.Arity1, O> sumOfLogsComputer;
/**
* TODO
*
* @param input
* @param geometricMean
*/
@Override
public void compute(final RandomAccessibleInterval input,
final O geometricMean)
{
final O size = geometricMean.createVariable();
sizeComputer.compute(input, size);
final O sumOfLogs = geometricMean.createVariable();
sumOfLogsComputer.compute(input, sumOfLogs);
if (size.getRealDouble() != 0) {
geometricMean.setReal(Math.exp(sumOfLogs.getRealDouble() / size
.getRealDouble()));
}
else {
geometricMean.setReal(0);
}
}
}
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