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Download hadoop-bam JAR 7.8.0 with all dependencies

A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.

Files of the artifact hadoop-bam version 7.8.0 from the group org.seqdoop.

Artifact hadoop-bam
Group org.seqdoop
Version 7.8.0
Last update 23. February 2017
Tags: files hadoop using common library java bioinformatics framework manipulation formats mapreduce
Organization not specified
URL http://sourceforge.net/projects/hadoop-bam/
License MIT-License
Dependencies amount 4
Dependencies hadoop-client, htsjdk, jsr203hadoop, slf4j-api,
There are maybe transitive dependencies!

There is a newer version: 7.10.0

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Source code of hadoop-bam version 7.8.0

META-INF

META-INF.META-INF.MANIFEST.MF

META-INF.maven.org.seqdoop.hadoop-bam

META-INF.maven.org.seqdoop.hadoop-bam.META-INF.maven.org.seqdoop.hadoop-bam.pom.properties

META-INF.maven.org.seqdoop.hadoop-bam.META-INF.maven.org.seqdoop.hadoop-bam.pom.xml

org.seqdoop.hadoop_bam

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.AnySAMInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.AnySAMOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMRecordReader

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMSplitGuesser

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BCFRecordReader

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BCFRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BCFSplitGuesser

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BaseSplitGuesser

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMRecordReader

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FastaInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FastqInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FastqOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FileVirtualSplit

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FormatConstants

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FormatException

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringBAMOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringBAMRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringBCFRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringCRAMOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringCRAMRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringSAMRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringVCFOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringVCFRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyBAMRecordFactory

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyBCFGenotypesContext

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyParsingGenotypesContext

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyVCFGenotypesContext

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LineReader

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.QseqInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.QseqOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.ReferenceFragment

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMRecordReader

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMRecordWritable

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SequencedFragment

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SplittingBAMIndex

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SplittingBAMIndexer

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFInputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFOutputFormat

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFRecordReader

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFRecordWriter

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VariantContextCodec

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VariantContextWithHeader

org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VariantContextWritable

org.seqdoop.hadoop_bam.util

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFBlockIndex

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFBlockIndexer

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFCodec

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFCompressionOutputStream

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFEnhancedGzipCodec

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFSplitCompressionInputStream

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFSplitFileInputFormat

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFSplitGuesser

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.ConfHelper

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.DataInputWrapper

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.DataOutputWrapper

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.GetSortedBAMHeader

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.MurmurHash3

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.NIOFileUtil

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.Pair

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SAMFileMerger

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SAMHeaderReader

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SAMOutputPreparer

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SeekableArrayStream

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.Timer

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.VCFFileMerger

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.VCFHeaderReader

org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.WrapSeekable

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