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Download hadoop-bam JAR 7.9.1 with all dependencies


A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.

Files of the artifact hadoop-bam version 7.9.1 from the group org.seqdoop.

Artifact hadoop-bam
Group org.seqdoop
Version 7.9.1
Last update 18. December 2017
Tags: files hadoop using common library java bioinformatics framework manipulation formats mapreduce
Organization not specified
URL http://sourceforge.net/projects/hadoop-bam/
License MIT-License
Dependencies amount 4
Dependencies hadoop-client, htsjdk, jsr203hadoop, slf4j-api,
There are maybe transitive dependencies!
There is a newer version: 7.10.0
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Source code of hadoop-bam version 7.9.1

META-INF
META-INF.META-INF.MANIFEST.MF
META-INF.maven.org.seqdoop.hadoop-bam
META-INF.maven.org.seqdoop.hadoop-bam.META-INF.maven.org.seqdoop.hadoop-bam.pom.properties
META-INF.maven.org.seqdoop.hadoop-bam.META-INF.maven.org.seqdoop.hadoop-bam.pom.xml
htsjdk.samtools
htsjdk.samtools.htsjdk.samtools.LinearBAMIndex
htsjdk.samtools.htsjdk.samtools.SAMRecordHelper
org.seqdoop.hadoop_bam
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.AnySAMInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.AnySAMOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMRecordReader
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BAMSplitGuesser
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BCFRecordReader
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BCFRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BCFSplitGuesser
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.BaseSplitGuesser
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMRecordReader
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.CRAMRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FastaInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FastqInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FastqOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FileVirtualSplit
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FormatConstants
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.FormatException
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringAnySAMOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringBAMOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringBAMRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringBCFRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringCRAMOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringCRAMRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringSAMRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringVCFOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.KeyIgnoringVCFRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyBAMRecordFactory
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyBCFGenotypesContext
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyParsingGenotypesContext
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LazyVCFGenotypesContext
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.LineReader
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.QseqInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.QseqOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.ReferenceFragment
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMRecordReader
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMRecordWritable
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SAMRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SequencedFragment
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SplittingBAMIndex
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.SplittingBAMIndexer
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFInputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFOutputFormat
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFRecordReader
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VCFRecordWriter
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VariantContextCodec
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VariantContextWithHeader
org.seqdoop.hadoop_bam.org.seqdoop.hadoop_bam.VariantContextWritable
org.seqdoop.hadoop_bam.util
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFBlockIndex
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFBlockIndexer
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFCodec
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFCompressionOutputStream
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFEnhancedGzipCodec
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFSplitCompressionInputStream
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFSplitFileInputFormat
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.BGZFSplitGuesser
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.ConfHelper
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.DataInputWrapper
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.DataOutputWrapper
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.GetSortedBAMHeader
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.IntervalUtil
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.MurmurHash3
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.NIOFileUtil
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.Pair
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SAMFileMerger
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SAMHeaderReader
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SAMOutputPreparer
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.SeekableArrayStream
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.Timer
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.VCFFileMerger
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.VCFHeaderReader
org.seqdoop.hadoop_bam.util.org.seqdoop.hadoop_bam.util.WrapSeekable




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