de.regnis.q.sequence.QSequenceDifference Maven / Gradle / Ivy
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/*
* ====================================================================
* Copyright (c) 2004 Marc Strapetz, [email protected].
* All rights reserved.
*
* This software is licensed as described in the file COPYING, which
* you should have received as part of this distribution. Use is
* subject to license terms.
* ====================================================================
*/
package de.regnis.q.sequence;
import java.util.*;
import de.regnis.q.sequence.core.*;
import de.regnis.q.sequence.media.*;
/**
* @author Marc Strapetz
*/
public class QSequenceDifference
implements QSequenceSnakeRegister, QSequenceCommonBlockFactory {
// Fields =================================================================
private final QSequenceMedia media;
private final QSequenceMediaIndexTransformer indexTransformer;
private final boolean[] leftCommonPoints;
private final boolean[] rightCommonPoints;
private final int maximumSearchDepth;
// Setup ==================================================================
public QSequenceDifference(QSequenceMedia media, QSequenceMediaIndexTransformer indexTransformer) {
this(media, indexTransformer, Integer.MAX_VALUE);
}
public QSequenceDifference(QSequenceMedia media, QSequenceMediaIndexTransformer indexTransformer, int maximumSearchDepth) {
QSequenceAssert.assertNotNull(media);
QSequenceAssert.assertNotNull(indexTransformer);
this.media = media;
this.indexTransformer = indexTransformer;
this.leftCommonPoints = new boolean[indexTransformer.getMediaLeftLength()];
this.rightCommonPoints = new boolean[indexTransformer.getMediaRightLength()];
this.maximumSearchDepth = maximumSearchDepth;
}
// Implemented ============================================================
public void registerSnake(int leftFrom, int leftTo, int rightFrom, int rightTo) throws QSequenceCancelledException {
for (int leftIndex = leftFrom; leftIndex <= leftTo; leftIndex++) {
QSequenceAssert.assertTrue(!leftCommonPoints[indexTransformer.getMediaLeftIndex(leftIndex)]);
leftCommonPoints[indexTransformer.getMediaLeftIndex(leftIndex)] = true;
}
for (int rightIndex = rightFrom; rightIndex <= rightTo; rightIndex++) {
QSequenceAssert.assertTrue(!rightCommonPoints[indexTransformer.getMediaRightIndex(rightIndex)]);
rightCommonPoints[indexTransformer.getMediaRightIndex(rightIndex)] = true;
}
}
public Object createCommonBlock(int leftFrom, int leftTo, int rightFrom, int rightTo) {
return null;
}
public Object createDistinctBlock(int leftFrom, int leftTo, int rightFrom, int rightTo) {
return new QSequenceDifferenceBlock(leftFrom, leftTo, rightFrom, rightTo);
}
// Accessing ==============================================================
public List getBlocks() throws QSequenceException {
final QSequenceAlgorithm algorithm = new QSequenceAlgorithm(media, this, maximumSearchDepth);
algorithm.produceSnakesInOrder();
return QSequenceCommonBlocks.createBlocks(leftCommonPoints, rightCommonPoints, this);
}
}