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A selection of tools for processing parallel texts.
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package gate.alignment.gui.views;
import gate.Annotation;
import gate.Document;
import gate.alignment.Alignment;
import gate.alignment.AlignmentListener;
import gate.alignment.gui.AlignmentAction;
import gate.alignment.gui.AlignmentEditor;
import gate.alignment.gui.AlignmentTask;
import gate.alignment.gui.AlignmentView;
import gate.alignment.gui.PUAPair;
import gate.compound.CompoundDocument;
import gate.util.OffsetComparator;
import java.awt.BasicStroke;
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Dimension;
import java.awt.Font;
import java.awt.Graphics;
import java.awt.Graphics2D;
import java.awt.Point;
import java.awt.Rectangle;
import java.awt.Stroke;
import java.awt.event.MouseEvent;
import java.awt.geom.Line2D;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.Timer;
import java.util.TimerTask;
import javax.swing.BorderFactory;
import javax.swing.Box;
import javax.swing.BoxLayout;
import javax.swing.JLabel;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JPopupMenu;
import javax.swing.JScrollPane;
import javax.swing.JTable;
import javax.swing.SwingUtilities;
import javax.swing.event.MouseInputAdapter;
import javax.swing.table.DefaultTableModel;
/**
* This class provides an editor for aligning texts in a compound document.
*/
@SuppressWarnings("serial")
public class ParallelTextView extends JPanel implements AlignmentListener,
AlignmentView {
private static final long serialVersionUID = -2867467022258265114L;
/**
* scrollpane that holds all the sourcePanel, targetPanel and the linesCanvas
*/
private JScrollPane waScrollPane;
/**
* panel with word alignment GUI components
*/
private JPanel waPanel;
/**
* source panel that has labels for each individual alignment unit in the
* source parent of alignment unit
*/
private JPanel sourcePanel;
/**
* canvas used for drawing links between the alignment units
*/
private MappingsPanel linesCanvas;
/**
* target panel that has labels for each individual alignment unit in the
* target parent of alignment unit
*/
private JPanel targetPanel;
/**
* Alignment Task object
*/
private AlignmentTask alignmentTask;
/**
* mappings for annotations and their highlights
*/
private HashMap sourceHighlights;
/**
* mappings for annotations and their highlights
*/
private HashMap targetHighlights;
/**
* Remembers the selected annotations
*/
private List sourceLatestAnnotationsSelection;
/**
* Remembers the selected annotations
*/
private List targetLatestAnnotationsSelection;
/**
* A color that is being used for current highlighting
*/
private Color color;
/**
* Default font-size
*/
public static final int TEXT_SIZE = 20;
/**
* annotation highlight with the mouse on it
*/
private AnnotationHighlight currentAnnotationHightlight = null;
/**
* instance of the links view
*/
private ParallelTextView thisInstance = null;
private CompoundDocument compoundDocument;
public ParallelTextView(AlignmentTask alignmentTask) {
sourceHighlights = new HashMap();
targetHighlights = new HashMap();
sourceLatestAnnotationsSelection = new ArrayList();
targetLatestAnnotationsSelection = new ArrayList();
thisInstance = this;
initGui();
setTarget(alignmentTask);
}
/**
* Initialize the GUI
*/
private void initGui() {
setBorder(BorderFactory.createTitledBorder("Links View"));
waPanel = new JPanel(new BorderLayout());
sourcePanel = new JPanel() {
@Override
public Dimension getPreferredSize() {
Dimension superPreferred = super.getPreferredSize();
return new Dimension((int)Math.min(350, superPreferred.getWidth()),
(int)superPreferred.getHeight());
}
public Dimension getMinimumSize() {
return getPreferredSize();
}
};
sourcePanel.setLayout(new BoxLayout(sourcePanel, BoxLayout.Y_AXIS));
sourcePanel.setBackground(Color.WHITE);
targetPanel = new JPanel() {
@Override
public Dimension getPreferredSize() {
Dimension superPreferred = super.getPreferredSize();
return new Dimension((int)Math.min(350, superPreferred.getWidth()),
(int)superPreferred.getHeight());
}
public Dimension getMinimumSize() {
return getPreferredSize();
}
};
targetPanel.setLayout(new BoxLayout(targetPanel, BoxLayout.Y_AXIS));
targetPanel.setBackground(Color.WHITE);
linesCanvas = new MappingsPanel() {
@Override
public Dimension getPreferredSize() {
Dimension superPreferred = super.getPreferredSize();
return new Dimension((int)Math.min(100, superPreferred.getWidth()),
(int)superPreferred.getHeight());
}
public Dimension getMaximumSize() {
return getPreferredSize();
}
};
linesCanvas.setBackground(Color.WHITE);
linesCanvas.setLayout(null);
linesCanvas.setOpaque(true);
waPanel.add(sourcePanel, BorderLayout.WEST);
waPanel.add(linesCanvas, BorderLayout.CENTER);
waPanel.add(targetPanel, BorderLayout.EAST);
waScrollPane = new JScrollPane(waPanel);
waScrollPane.setPreferredSize(new Dimension(800, 400));
add(waScrollPane, BorderLayout.CENTER);
color = AlignmentEditor.getColor(null, 0.5f);
}
public void setTarget(AlignmentTask alignmentTask) {
this.alignmentTask = alignmentTask;
this.compoundDocument = alignmentTask.getCompoundDocument();
compoundDocument.getAlignmentInformation(
this.alignmentTask.getUaFeatureName()).addAlignmentListener(this);
}
/**
* This method clears up the latest annotation selection
*/
public void clearLatestAnnotationsSelection() {
if(sourceLatestAnnotationsSelection != null
&& !sourceLatestAnnotationsSelection.isEmpty()) {
for(Annotation annotation : sourceLatestAnnotationsSelection) {
AnnotationHighlight ah = sourceHighlights.get(annotation);
ah.setHighlighted(false, Color.WHITE);
}
sourceLatestAnnotationsSelection.clear();
}
if(targetLatestAnnotationsSelection != null
&& !targetLatestAnnotationsSelection.isEmpty()) {
for(Annotation annotation : targetLatestAnnotationsSelection) {
AnnotationHighlight ah = targetHighlights.get(annotation);
ah.setHighlighted(false, Color.WHITE);
}
targetLatestAnnotationsSelection.clear();
}
}
/**
* Executes the given action. It uses the pair that is being currently shown
* to collect the alignment information which is then used as parameters to
* call the provided action.
*
* @param aa
*/
public void executeAction(AlignmentAction aa) {
// obtaining source and target documents
Document srcDocument =
compoundDocument.getDocument(alignmentTask.getSrcDocId());
Document tgtDocument =
compoundDocument.getDocument(alignmentTask.getTgtDocId());
Alignment alignment =
compoundDocument.getAlignmentInformation(alignmentTask
.getUaFeatureName());
// obtaining selected annotations
Set srcSelectedAnnots =
new HashSet(sourceLatestAnnotationsSelection);
Set tgtSelectedAnnots =
new HashSet(targetLatestAnnotationsSelection);
if(currentAnnotationHightlight != null) {
Set alignedAnnots =
alignment
.getAlignedAnnotations(currentAnnotationHightlight.annotation);
if(alignedAnnots == null) alignedAnnots = new HashSet();
alignedAnnots.add(currentAnnotationHightlight.annotation);
for(Annotation annot : alignedAnnots) {
Document tempDoc = alignment.getDocument(annot);
if(tempDoc == srcDocument) {
srcSelectedAnnots.add(annot);
} else if(tempDoc == tgtDocument) {
tgtSelectedAnnots.add(annot);
}
}
// execute actions
alignmentTask.getAlignmentActionsManager().executeAction(this, aa,
srcSelectedAnnots, tgtSelectedAnnots,
currentAnnotationHightlight.annotation);
}
}
public void updateGUI(PUAPair pair) {
// before refreshing, we remove all the highlights
clearLatestAnnotationsSelection();
Rectangle visibleRect = waScrollPane.getVisibleRect();
sourcePanel.removeAll();
sourcePanel.updateUI();
targetPanel.removeAll();
targetPanel.updateUI();
linesCanvas.removeAllEdges();
linesCanvas.updateUI();
Alignment alignment =
compoundDocument.getAlignmentInformation(alignmentTask
.getUaFeatureName());
// for each underlying unit of alignment, we create a default
// annotation highlight.
sourceHighlights = new HashMap();
for(Annotation a : pair.getSourceUnitAnnotations()) {
String text = pair.getText(a, true);
AnnotationHighlight ah =
new AnnotationHighlight(text, Color.WHITE, a, true);
sourceHighlights.put(a, ah);
sourcePanel.add(ah);
sourcePanel.add(Box.createRigidArea(new Dimension(5, 10)));
}
sourcePanel.revalidate();
sourcePanel.updateUI();
targetHighlights = new HashMap();
for(Annotation a : pair.getTargetUnitAnnotations()) {
String text = pair.getText(a, false);
AnnotationHighlight ah =
new AnnotationHighlight(text, Color.WHITE, a, false);
targetHighlights.put(a, ah);
targetPanel.add(ah);
targetPanel.add(Box.createRigidArea(new Dimension(5, 10)));
}
targetPanel.revalidate();
targetPanel.updateUI();
// we keep record of which annotations are already highlighted in
// order to not highlight them again
Set highlightedAnnotations = new HashSet();
List srcAnnotList =
new ArrayList(sourceHighlights.keySet());
Collections.sort(srcAnnotList, new OffsetComparator());
for(int i = 0; i < srcAnnotList.size(); i++) {
Annotation srcAnnotation = srcAnnotList.get(i);
// if not aligned
if(!alignment.isAnnotationAligned(srcAnnotation)) continue;
// if already highlighted, don't do it again
if(highlightedAnnotations.contains(srcAnnotation)) continue;
Set targetAnnots =
alignment.getAlignedAnnotations(srcAnnotation);
targetAnnots.retainAll(targetHighlights.keySet());
Set sourceAnnots = new HashSet();
sourceAnnots.add(srcAnnotation);
highlightedAnnotations.add(srcAnnotation);
for(int j = i + 1; j < srcAnnotList.size(); j++) {
Annotation sAnnotation = srcAnnotList.get(j);
// if not aligned
if(!alignment.isAnnotationAligned(sAnnotation)) continue;
// if already highlighted, don't do it again
if(highlightedAnnotations.contains(sAnnotation)) continue;
Set alignedAnnots1 =
alignment.getAlignedAnnotations(sAnnotation);
alignedAnnots1.retainAll(targetHighlights.keySet());
if(targetAnnots.containsAll(alignedAnnots1)) {
sourceAnnots.add(sAnnotation);
highlightedAnnotations.add(sAnnotation);
}
}
Color newColor = AlignmentEditor.getColor(null, 0.2f);
boolean firstTime = true;
for(Annotation srcAnnot : sourceAnnots) {
AnnotationHighlight sAh = sourceHighlights.get(srcAnnot);
sAh.setHighlighted(true, newColor);
for(Annotation tgtAnnot : targetAnnots) {
AnnotationHighlight ah = targetHighlights.get(tgtAnnot);
if(firstTime) {
ah.setHighlighted(true, newColor);
}
Edge edge = new Edge();
edge.srcAH = sAh;
edge.tgtAH = ah;
linesCanvas.addEdge(edge);
linesCanvas.repaint();
}
firstTime = false;
}
}
if(visibleRect != null)
waScrollPane.scrollRectToVisible(visibleRect);
}
/**
* Internal class - it represents an alignment unit.
*
* @author niraj
*/
protected class AnnotationHighlight extends JLabel {
/**
* indicates if the annotation is highlighted or not
*/
boolean highlighted = false;
/**
* if the current highlight belongs to the source document
*/
boolean sourceDocument = false;
/**
* color of the highlight
*/
Color colorToUse = Color.WHITE;
/**
* annotation it refers to
*/
Annotation annotation;
/**
* constructor
*
* @param text -
* the underlying text of the annotation
* @param color -
* color of the highlight
* @param annot -
* annotation the current highlight refers to
* @param sourceDocument -
* if the current annotation belongs to the source document
*/
public AnnotationHighlight(String text, Color color, Annotation annot,
boolean sourceDocument) {
super("" + text + "");
this.setOpaque(true);
this.annotation = annot;
this.sourceDocument = sourceDocument;
this.colorToUse = color;
setBackground(this.colorToUse);
this.addMouseListener(new MouseActionListener());
setFont(new Font(getFont().getName(), Font.PLAIN, TEXT_SIZE));
}
@Override
public Dimension getPreferredSize() {
Dimension superPreferred = super.getPreferredSize();
return new Dimension((int)Math.min(390, superPreferred.getWidth()),
(int)superPreferred.getHeight());
}
@Override
public void paintComponent(Graphics g) {
super.paintComponent(g);
linesCanvas.repaint();
}
/**
* sets the annotation highlighted/dehighlighted
*
* @param val
* @param color
*/
public void setHighlighted(boolean val, Color color) {
this.highlighted = val;
this.colorToUse = color;
this.setBackground(color);
this.updateUI();
}
public boolean isHighlighted() {
return this.highlighted;
}
public void setHighlightColor(Color color) {
this.colorToUse = color;
this.setBackground(color);
this.updateUI();
}
public Color getHighlightColor() {
return this.colorToUse;
}
/**
* Implements various mouse events. E.g. what should happen when someone
* clicks on an unhighlighted annotation etc.
*
* @author niraj
*/
protected class MouseActionListener extends MouseInputAdapter {
public void mouseClicked(MouseEvent me) {
mouseExited(me);
AnnotationHighlight ah = (AnnotationHighlight)me.getSource();
Point pt = me.getPoint();
currentAnnotationHightlight = ah;
Alignment alignment =
compoundDocument.getAlignmentInformation(alignmentTask
.getUaFeatureName());
if(SwingUtilities.isRightMouseButton(me)) {
if(alignment.isAnnotationAligned(ah.annotation)) {
// lets clear the latest selection
clearLatestAnnotationsSelection();
} else {
// if user has right clicked and the unit is not already highlighted
// highlight it and show the right menu
// reducing one click for the user
if(!ah.highlighted) {
if(color == Color.WHITE)
color = AlignmentEditor.getColor(null, 0.5f);
ah.setHighlighted(true, color);
if(ah.isSourceDocument()) {
if(sourceLatestAnnotationsSelection == null) {
sourceLatestAnnotationsSelection = new ArrayList();
}
if(!sourceLatestAnnotationsSelection.contains(ah.annotation))
sourceLatestAnnotationsSelection.add(ah.annotation);
} else {
if(targetLatestAnnotationsSelection == null) {
targetLatestAnnotationsSelection = new ArrayList();
}
if(!targetLatestAnnotationsSelection.contains(ah.annotation))
targetLatestAnnotationsSelection.add(ah.annotation);
}
}
}
// we should show the option menu here
JPopupMenu optionsMenu =
alignmentTask.getAlignmentActionsManager().prepareOptionsMenu(
thisInstance,
alignment.isAnnotationAligned(ah.annotation),
ah.highlighted);
optionsMenu.show(ah, (int)pt.getX(), (int)pt.getY());
optionsMenu.setVisible(true);
return;
}
// was this annotation highlighted?
// if yes, remove the highlight
if(ah.highlighted) {
// we need to check if the ah is aligned
// if so, we should prompt user to first reset the
// alignment
if(alignment.isAnnotationAligned(ah.annotation)) {
JOptionPane.showMessageDialog(gate.gui.MainFrame.getInstance(),
"To remove this annotation from the current"
+ " aligment, please use the 'Remove Alignment'"
+ " from the options menu on right click");
return;
}
// the annotation is not aligned but recently highlighted
// so remove the highlight
ah.setHighlighted(false, Color.WHITE);
if(ah.isSourceDocument()) {
if(sourceLatestAnnotationsSelection == null) {
sourceLatestAnnotationsSelection = new ArrayList();
}
sourceLatestAnnotationsSelection.remove(ah.annotation);
} else {
if(targetLatestAnnotationsSelection == null) {
targetLatestAnnotationsSelection = new ArrayList();
}
targetLatestAnnotationsSelection.remove(ah.annotation);
}
} else {
if(color == Color.WHITE)
color = AlignmentEditor.getColor(null, 0.5f);
ah.setHighlighted(true, color);
if(ah.isSourceDocument()) {
if(sourceLatestAnnotationsSelection == null) {
sourceLatestAnnotationsSelection = new ArrayList();
}
if(!sourceLatestAnnotationsSelection.contains(ah.annotation))
sourceLatestAnnotationsSelection.add(ah.annotation);
} else {
if(targetLatestAnnotationsSelection == null) {
targetLatestAnnotationsSelection = new ArrayList();
}
if(!targetLatestAnnotationsSelection.contains(ah.annotation))
targetLatestAnnotationsSelection.add(ah.annotation);
}
}
}
JPopupMenu menu = new JPopupMenu();
FeaturesModel model = new FeaturesModel();
JTable featuresTable = new JTable(model);
Timer timer = new Timer();
TimerTask task;
public void mouseEntered(final MouseEvent me) {
final AnnotationHighlight ah = (AnnotationHighlight)me.getSource();
model.setAnnotation(ah.annotation);
task = new TimerTask() {
public void run() {
menu.add(featuresTable);
menu.show(ah, me.getX(), me.getY() + 10);
menu.revalidate();
menu.updateUI();
}
};
timer.schedule(task, 2000);
}
public void mouseExited(MouseEvent me) {
if(task != null) {
task.cancel();
}
if(menu != null && menu.isVisible()) {
menu.setVisible(false);
}
}
}
public boolean isSourceDocument() {
return sourceDocument;
}
}
/**
* listens to the annotationsAligned event and updates the GUI accordingly.
*/
public void annotationsAligned(Annotation srcAnnotation, String srcAS,
Document srcDocument, Annotation tgtAnnotation, String tgtAS,
Document tgtDocument) {
if(srcAnnotation == null || tgtAnnotation == null || srcDocument == null
|| tgtDocument == null) {
System.err.println("One of the src/tgt annotation/document is null");
return;
}
AnnotationHighlight sAh = sourceHighlights.get(srcAnnotation);
AnnotationHighlight tAh = targetHighlights.get(tgtAnnotation);
// may be not related to current highlight
if(sAh == null || tAh == null) {
return;
}
// otherwise, highlight it
if(sAh.isHighlighted()) {
tAh.setHighlighted(true, sAh.colorToUse);
} else if(tAh.isHighlighted()) {
sAh.setHighlighted(true, tAh.colorToUse);
} else {
Color newColor = AlignmentEditor.getColor(null, 0.5f);
sAh.setHighlighted(true, newColor);
tAh.setHighlighted(true, newColor);
}
Edge e = new Edge();
e.srcAH = sAh;
e.tgtAH = tAh;
linesCanvas.addEdge(e);
linesCanvas.updateUI();
waPanel.updateUI();
}
/**
* listens to the annotationsUnAligned event and updates the GUI accordingly.
*/
public void annotationsUnaligned(Annotation srcAnnotation, String srcAS,
Document srcDocument, Annotation tgtAnnotation, String tgtAS,
Document tgtDocument) {
if(srcAnnotation == null || tgtAnnotation == null || srcDocument == null
|| tgtDocument == null) {
System.err.println("One of the src/tgt annotation/document is null");
return;
}
AnnotationHighlight sAh = sourceHighlights.get(srcAnnotation);
AnnotationHighlight tAh = targetHighlights.get(tgtAnnotation);
// may be not related to current highlight
if(sAh == null || tAh == null) {
return;
}
if(linesCanvas.removeEdges(sAh, tAh)) {
if(!alignmentTask.getAlignment().isAnnotationAligned(srcAnnotation)) {
sAh.setHighlighted(false, Color.WHITE);
}
if(!alignmentTask.getAlignment().isAnnotationAligned(tgtAnnotation)) {
tAh.setHighlighted(false, Color.WHITE);
}
}
linesCanvas.updateUI();
waPanel.updateUI();
}
/**
* simply refreshes the gui
*/
public void refresh() {
if(alignmentTask.current() != null) {
updateGUI(alignmentTask.current());
}
}
/**
* represents annotation features. This is used for displaying features of the
* annotation currently being focused by the mouse pointer.
*
* @author gate
*/
public class FeaturesModel extends DefaultTableModel {
// annotation whoes features need to be displayed
Annotation toShow;
/**
* keys
*/
ArrayList features;
/**
* values
*/
ArrayList values;
/**
* constructor
*/
public FeaturesModel() {
super(new String[]{"Feature", "Value"}, 0);
}
/**
* sets the annotation whoes features need to be shown
*
* @param annot
*/
public void setAnnotation(Annotation annot) {
features = new ArrayList();
values = new ArrayList();
for(Object key : annot.getFeatures().keySet()) {
features.add(key.toString());
values.add(annot.getFeatures().get(key).toString());
}
super.fireTableDataChanged();
}
public Class getColumnClass(int column) {
return String.class;
}
public int getRowCount() {
return values == null ? 0 : values.size();
}
public int getColumnCount() {
return 2;
}
public String getColumnName(int column) {
switch(column){
case 0:
return "Feature";
default:
return "Value";
}
}
public Object getValueAt(int row, int column) {
switch(column){
case 0:
return features.get(row);
default:
return values.get(row);
}
}
}
/**
* canvas that shows lines for every link present in the current pair
*
* @author gate
*/
private class MappingsPanel extends JPanel {
/**
* edges to paint
*/
private Set edges = new HashSet();
/**
* constructor
*/
public MappingsPanel() {
// do nothing
setOpaque(true);
setBackground(Color.WHITE);
}
/**
* clears the local cache
*/
public void removeAllEdges() {
edges.clear();
}
/**
* clears the local cache
*/
@SuppressWarnings("unused")
public boolean removeEdges(Edge e) {
return edges.remove(e);
}
/**
* clears the local cache
*/
public boolean removeEdges(AnnotationHighlight sAh, AnnotationHighlight tAh) {
Edge toRemove = null;
for(Edge e : edges) {
if(e.srcAH == sAh && e.tgtAH == tAh) {
toRemove = e;
break;
}
}
if(toRemove != null) {
return edges.remove(toRemove);
}
return false;
}
/**
* adds a new edge to the panel
*
* @param edge
*/
public void addEdge(Edge edge) {
if(edge != null) edges.add(edge);
}
/**
* draws edges
*/
public void paintComponent(Graphics g) {
super.paintComponent(g);
Graphics2D g2d = (Graphics2D)g;
g2d.setBackground(Color.WHITE);
g2d.clearRect(0, 0, this.getWidth(), this.getHeight());
for(Edge e : edges) {
int y =
(int)(e.srcAH.getBounds().y + ((double)e.srcAH
.getBounds().height / 2));
int x = 0;
int y1 =
(int)(e.tgtAH.getBounds().y + ((double)e.tgtAH
.getBounds().height / 2));
int x1 = this.getBounds().width;
Line2D line =
new Line2D.Double(new Point(x, y), new Point(x1,
y1));
Stroke stroke = new BasicStroke(2.0f);
g2d.setStroke(stroke);
Color c = g2d.getColor();
g2d.setColor(e.srcAH.getBackground());
g2d.draw(line);
g2d.setColor(c);
}
}
}
/**
* internal class to represent link between the source and the target
* alignment unit.
*
* @author gate
*/
private class Edge {
AnnotationHighlight srcAH;
AnnotationHighlight tgtAH;
}
}
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