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Genome Damage and Stability Centre SMLM Package
Software for single molecule localisation microscopy (SMLM)
The newest version!
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: uk/ac/sussex/gdsc/smlm/data/config/molecule.proto
package uk.ac.sussex.gdsc.smlm.data.config;
public final class MoleculeProtos {
private MoleculeProtos() {}
public static void registerAllExtensions(
com.google.protobuf.ExtensionRegistryLite registry) {
}
public static void registerAllExtensions(
com.google.protobuf.ExtensionRegistry registry) {
registerAllExtensions(
(com.google.protobuf.ExtensionRegistryLite) registry);
}
public interface AtomOrBuilder extends
// @@protoc_insertion_point(interface_extends:uk.ac.sussex.gdsc.smlm.data.config.Atom)
com.google.protobuf.MessageOrBuilder {
/**
* double mass = 1;
* @return The mass.
*/
double getMass();
/**
* double x = 2;
* @return The x.
*/
double getX();
/**
* double y = 3;
* @return The y.
*/
double getY();
/**
* double z = 4;
* @return The z.
*/
double getZ();
}
/**
* Protobuf type {@code uk.ac.sussex.gdsc.smlm.data.config.Atom}
*/
public static final class Atom extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:uk.ac.sussex.gdsc.smlm.data.config.Atom)
AtomOrBuilder {
private static final long serialVersionUID = 0L;
// Use Atom.newBuilder() to construct.
private Atom(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private Atom() {
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new Atom();
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_fieldAccessorTable
.ensureFieldAccessorsInitialized(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.class, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder.class);
}
public static final int MASS_FIELD_NUMBER = 1;
private double mass_ = 0D;
/**
* double mass = 1;
* @return The mass.
*/
@java.lang.Override
public double getMass() {
return mass_;
}
public static final int X_FIELD_NUMBER = 2;
private double x_ = 0D;
/**
* double x = 2;
* @return The x.
*/
@java.lang.Override
public double getX() {
return x_;
}
public static final int Y_FIELD_NUMBER = 3;
private double y_ = 0D;
/**
* double y = 3;
* @return The y.
*/
@java.lang.Override
public double getY() {
return y_;
}
public static final int Z_FIELD_NUMBER = 4;
private double z_ = 0D;
/**
* double z = 4;
* @return The z.
*/
@java.lang.Override
public double getZ() {
return z_;
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (java.lang.Double.doubleToRawLongBits(mass_) != 0) {
output.writeDouble(1, mass_);
}
if (java.lang.Double.doubleToRawLongBits(x_) != 0) {
output.writeDouble(2, x_);
}
if (java.lang.Double.doubleToRawLongBits(y_) != 0) {
output.writeDouble(3, y_);
}
if (java.lang.Double.doubleToRawLongBits(z_) != 0) {
output.writeDouble(4, z_);
}
getUnknownFields().writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (java.lang.Double.doubleToRawLongBits(mass_) != 0) {
size += com.google.protobuf.CodedOutputStream
.computeDoubleSize(1, mass_);
}
if (java.lang.Double.doubleToRawLongBits(x_) != 0) {
size += com.google.protobuf.CodedOutputStream
.computeDoubleSize(2, x_);
}
if (java.lang.Double.doubleToRawLongBits(y_) != 0) {
size += com.google.protobuf.CodedOutputStream
.computeDoubleSize(3, y_);
}
if (java.lang.Double.doubleToRawLongBits(z_) != 0) {
size += com.google.protobuf.CodedOutputStream
.computeDoubleSize(4, z_);
}
size += getUnknownFields().getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom)) {
return super.equals(obj);
}
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom other = (uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom) obj;
if (java.lang.Double.doubleToLongBits(getMass())
!= java.lang.Double.doubleToLongBits(
other.getMass())) return false;
if (java.lang.Double.doubleToLongBits(getX())
!= java.lang.Double.doubleToLongBits(
other.getX())) return false;
if (java.lang.Double.doubleToLongBits(getY())
!= java.lang.Double.doubleToLongBits(
other.getY())) return false;
if (java.lang.Double.doubleToLongBits(getZ())
!= java.lang.Double.doubleToLongBits(
other.getZ())) return false;
if (!getUnknownFields().equals(other.getUnknownFields())) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
hash = (37 * hash) + MASS_FIELD_NUMBER;
hash = (53 * hash) + com.google.protobuf.Internal.hashLong(
java.lang.Double.doubleToLongBits(getMass()));
hash = (37 * hash) + X_FIELD_NUMBER;
hash = (53 * hash) + com.google.protobuf.Internal.hashLong(
java.lang.Double.doubleToLongBits(getX()));
hash = (37 * hash) + Y_FIELD_NUMBER;
hash = (53 * hash) + com.google.protobuf.Internal.hashLong(
java.lang.Double.doubleToLongBits(getY()));
hash = (37 * hash) + Z_FIELD_NUMBER;
hash = (53 * hash) + com.google.protobuf.Internal.hashLong(
java.lang.Double.doubleToLongBits(getZ()));
hash = (29 * hash) + getUnknownFields().hashCode();
memoizedHashCode = hash;
return hash;
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
* Protobuf type {@code uk.ac.sussex.gdsc.smlm.data.config.Atom}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:uk.ac.sussex.gdsc.smlm.data.config.Atom)
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.AtomOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_fieldAccessorTable
.ensureFieldAccessorsInitialized(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.class, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder.class);
}
// Construct using uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.newBuilder()
private Builder() {
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
}
@java.lang.Override
public Builder clear() {
super.clear();
bitField0_ = 0;
mass_ = 0D;
x_ = 0D;
y_ = 0D;
z_ = 0D;
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_descriptor;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom getDefaultInstanceForType() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.getDefaultInstance();
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom build() {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom buildPartial() {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom result = new uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom(this);
if (bitField0_ != 0) { buildPartial0(result); }
onBuilt();
return result;
}
private void buildPartial0(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom result) {
int from_bitField0_ = bitField0_;
if (((from_bitField0_ & 0x00000001) != 0)) {
result.mass_ = mass_;
}
if (((from_bitField0_ & 0x00000002) != 0)) {
result.x_ = x_;
}
if (((from_bitField0_ & 0x00000004) != 0)) {
result.y_ = y_;
}
if (((from_bitField0_ & 0x00000008) != 0)) {
result.z_ = z_;
}
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom) {
return mergeFrom((uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom other) {
if (other == uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.getDefaultInstance()) return this;
if (other.getMass() != 0D) {
setMass(other.getMass());
}
if (other.getX() != 0D) {
setX(other.getX());
}
if (other.getY() != 0D) {
setY(other.getY());
}
if (other.getZ() != 0D) {
setZ(other.getZ());
}
this.mergeUnknownFields(other.getUnknownFields());
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 9: {
mass_ = input.readDouble();
bitField0_ |= 0x00000001;
break;
} // case 9
case 17: {
x_ = input.readDouble();
bitField0_ |= 0x00000002;
break;
} // case 17
case 25: {
y_ = input.readDouble();
bitField0_ |= 0x00000004;
break;
} // case 25
case 33: {
z_ = input.readDouble();
bitField0_ |= 0x00000008;
break;
} // case 33
default: {
if (!super.parseUnknownField(input, extensionRegistry, tag)) {
done = true; // was an endgroup tag
}
break;
} // default:
} // switch (tag)
} // while (!done)
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.unwrapIOException();
} finally {
onChanged();
} // finally
return this;
}
private int bitField0_;
private double mass_ ;
/**
* double mass = 1;
* @return The mass.
*/
@java.lang.Override
public double getMass() {
return mass_;
}
/**
* double mass = 1;
* @param value The mass to set.
* @return This builder for chaining.
*/
public Builder setMass(double value) {
mass_ = value;
bitField0_ |= 0x00000001;
onChanged();
return this;
}
/**
* double mass = 1;
* @return This builder for chaining.
*/
public Builder clearMass() {
bitField0_ = (bitField0_ & ~0x00000001);
mass_ = 0D;
onChanged();
return this;
}
private double x_ ;
/**
* double x = 2;
* @return The x.
*/
@java.lang.Override
public double getX() {
return x_;
}
/**
* double x = 2;
* @param value The x to set.
* @return This builder for chaining.
*/
public Builder setX(double value) {
x_ = value;
bitField0_ |= 0x00000002;
onChanged();
return this;
}
/**
* double x = 2;
* @return This builder for chaining.
*/
public Builder clearX() {
bitField0_ = (bitField0_ & ~0x00000002);
x_ = 0D;
onChanged();
return this;
}
private double y_ ;
/**
* double y = 3;
* @return The y.
*/
@java.lang.Override
public double getY() {
return y_;
}
/**
* double y = 3;
* @param value The y to set.
* @return This builder for chaining.
*/
public Builder setY(double value) {
y_ = value;
bitField0_ |= 0x00000004;
onChanged();
return this;
}
/**
* double y = 3;
* @return This builder for chaining.
*/
public Builder clearY() {
bitField0_ = (bitField0_ & ~0x00000004);
y_ = 0D;
onChanged();
return this;
}
private double z_ ;
/**
* double z = 4;
* @return The z.
*/
@java.lang.Override
public double getZ() {
return z_;
}
/**
* double z = 4;
* @param value The z to set.
* @return This builder for chaining.
*/
public Builder setZ(double value) {
z_ = value;
bitField0_ |= 0x00000008;
onChanged();
return this;
}
/**
* double z = 4;
* @return This builder for chaining.
*/
public Builder clearZ() {
bitField0_ = (bitField0_ & ~0x00000008);
z_ = 0D;
onChanged();
return this;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:uk.ac.sussex.gdsc.smlm.data.config.Atom)
}
// @@protoc_insertion_point(class_scope:uk.ac.sussex.gdsc.smlm.data.config.Atom)
private static final uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom();
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public Atom parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
Builder builder = newBuilder();
try {
builder.mergeFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(builder.buildPartial());
} catch (com.google.protobuf.UninitializedMessageException e) {
throw e.asInvalidProtocolBufferException().setUnfinishedMessage(builder.buildPartial());
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(e)
.setUnfinishedMessage(builder.buildPartial());
}
return builder.buildPartial();
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
public interface MoleculeOrBuilder extends
// @@protoc_insertion_point(interface_extends:uk.ac.sussex.gdsc.smlm.data.config.Molecule)
com.google.protobuf.MessageOrBuilder {
/**
* double fraction = 1;
* @return The fraction.
*/
double getFraction();
/**
* double diffusion_rate = 2;
* @return The diffusionRate.
*/
double getDiffusionRate();
/**
* string diffusion_type = 3;
* @return The diffusionType.
*/
java.lang.String getDiffusionType();
/**
* string diffusion_type = 3;
* @return The bytes for diffusionType.
*/
com.google.protobuf.ByteString
getDiffusionTypeBytes();
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
java.util.List
getAtomList();
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom getAtom(int index);
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
int getAtomCount();
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
java.util.List
getAtomOrBuilderList();
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.AtomOrBuilder getAtomOrBuilder(
int index);
}
/**
* Protobuf type {@code uk.ac.sussex.gdsc.smlm.data.config.Molecule}
*/
public static final class Molecule extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:uk.ac.sussex.gdsc.smlm.data.config.Molecule)
MoleculeOrBuilder {
private static final long serialVersionUID = 0L;
// Use Molecule.newBuilder() to construct.
private Molecule(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private Molecule() {
diffusionType_ = "";
atom_ = java.util.Collections.emptyList();
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new Molecule();
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_fieldAccessorTable
.ensureFieldAccessorsInitialized(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.class, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder.class);
}
public static final int FRACTION_FIELD_NUMBER = 1;
private double fraction_ = 0D;
/**
* double fraction = 1;
* @return The fraction.
*/
@java.lang.Override
public double getFraction() {
return fraction_;
}
public static final int DIFFUSION_RATE_FIELD_NUMBER = 2;
private double diffusionRate_ = 0D;
/**
* double diffusion_rate = 2;
* @return The diffusionRate.
*/
@java.lang.Override
public double getDiffusionRate() {
return diffusionRate_;
}
public static final int DIFFUSION_TYPE_FIELD_NUMBER = 3;
@SuppressWarnings("serial")
private volatile java.lang.Object diffusionType_ = "";
/**
* string diffusion_type = 3;
* @return The diffusionType.
*/
@java.lang.Override
public java.lang.String getDiffusionType() {
java.lang.Object ref = diffusionType_;
if (ref instanceof java.lang.String) {
return (java.lang.String) ref;
} else {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
diffusionType_ = s;
return s;
}
}
/**
* string diffusion_type = 3;
* @return The bytes for diffusionType.
*/
@java.lang.Override
public com.google.protobuf.ByteString
getDiffusionTypeBytes() {
java.lang.Object ref = diffusionType_;
if (ref instanceof java.lang.String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
diffusionType_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
public static final int ATOM_FIELD_NUMBER = 4;
@SuppressWarnings("serial")
private java.util.List atom_;
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
@java.lang.Override
public java.util.List getAtomList() {
return atom_;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
@java.lang.Override
public java.util.List
getAtomOrBuilderList() {
return atom_;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
@java.lang.Override
public int getAtomCount() {
return atom_.size();
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom getAtom(int index) {
return atom_.get(index);
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.AtomOrBuilder getAtomOrBuilder(
int index) {
return atom_.get(index);
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
if (java.lang.Double.doubleToRawLongBits(fraction_) != 0) {
output.writeDouble(1, fraction_);
}
if (java.lang.Double.doubleToRawLongBits(diffusionRate_) != 0) {
output.writeDouble(2, diffusionRate_);
}
if (!com.google.protobuf.GeneratedMessageV3.isStringEmpty(diffusionType_)) {
com.google.protobuf.GeneratedMessageV3.writeString(output, 3, diffusionType_);
}
for (int i = 0; i < atom_.size(); i++) {
output.writeMessage(4, atom_.get(i));
}
getUnknownFields().writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
if (java.lang.Double.doubleToRawLongBits(fraction_) != 0) {
size += com.google.protobuf.CodedOutputStream
.computeDoubleSize(1, fraction_);
}
if (java.lang.Double.doubleToRawLongBits(diffusionRate_) != 0) {
size += com.google.protobuf.CodedOutputStream
.computeDoubleSize(2, diffusionRate_);
}
if (!com.google.protobuf.GeneratedMessageV3.isStringEmpty(diffusionType_)) {
size += com.google.protobuf.GeneratedMessageV3.computeStringSize(3, diffusionType_);
}
for (int i = 0; i < atom_.size(); i++) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(4, atom_.get(i));
}
size += getUnknownFields().getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule)) {
return super.equals(obj);
}
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule other = (uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule) obj;
if (java.lang.Double.doubleToLongBits(getFraction())
!= java.lang.Double.doubleToLongBits(
other.getFraction())) return false;
if (java.lang.Double.doubleToLongBits(getDiffusionRate())
!= java.lang.Double.doubleToLongBits(
other.getDiffusionRate())) return false;
if (!getDiffusionType()
.equals(other.getDiffusionType())) return false;
if (!getAtomList()
.equals(other.getAtomList())) return false;
if (!getUnknownFields().equals(other.getUnknownFields())) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
hash = (37 * hash) + FRACTION_FIELD_NUMBER;
hash = (53 * hash) + com.google.protobuf.Internal.hashLong(
java.lang.Double.doubleToLongBits(getFraction()));
hash = (37 * hash) + DIFFUSION_RATE_FIELD_NUMBER;
hash = (53 * hash) + com.google.protobuf.Internal.hashLong(
java.lang.Double.doubleToLongBits(getDiffusionRate()));
hash = (37 * hash) + DIFFUSION_TYPE_FIELD_NUMBER;
hash = (53 * hash) + getDiffusionType().hashCode();
if (getAtomCount() > 0) {
hash = (37 * hash) + ATOM_FIELD_NUMBER;
hash = (53 * hash) + getAtomList().hashCode();
}
hash = (29 * hash) + getUnknownFields().hashCode();
memoizedHashCode = hash;
return hash;
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
* Protobuf type {@code uk.ac.sussex.gdsc.smlm.data.config.Molecule}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:uk.ac.sussex.gdsc.smlm.data.config.Molecule)
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MoleculeOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_fieldAccessorTable
.ensureFieldAccessorsInitialized(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.class, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder.class);
}
// Construct using uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.newBuilder()
private Builder() {
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
}
@java.lang.Override
public Builder clear() {
super.clear();
bitField0_ = 0;
fraction_ = 0D;
diffusionRate_ = 0D;
diffusionType_ = "";
if (atomBuilder_ == null) {
atom_ = java.util.Collections.emptyList();
} else {
atom_ = null;
atomBuilder_.clear();
}
bitField0_ = (bitField0_ & ~0x00000008);
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_descriptor;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule getDefaultInstanceForType() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.getDefaultInstance();
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule build() {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule buildPartial() {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule result = new uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule(this);
buildPartialRepeatedFields(result);
if (bitField0_ != 0) { buildPartial0(result); }
onBuilt();
return result;
}
private void buildPartialRepeatedFields(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule result) {
if (atomBuilder_ == null) {
if (((bitField0_ & 0x00000008) != 0)) {
atom_ = java.util.Collections.unmodifiableList(atom_);
bitField0_ = (bitField0_ & ~0x00000008);
}
result.atom_ = atom_;
} else {
result.atom_ = atomBuilder_.build();
}
}
private void buildPartial0(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule result) {
int from_bitField0_ = bitField0_;
if (((from_bitField0_ & 0x00000001) != 0)) {
result.fraction_ = fraction_;
}
if (((from_bitField0_ & 0x00000002) != 0)) {
result.diffusionRate_ = diffusionRate_;
}
if (((from_bitField0_ & 0x00000004) != 0)) {
result.diffusionType_ = diffusionType_;
}
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule) {
return mergeFrom((uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule other) {
if (other == uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.getDefaultInstance()) return this;
if (other.getFraction() != 0D) {
setFraction(other.getFraction());
}
if (other.getDiffusionRate() != 0D) {
setDiffusionRate(other.getDiffusionRate());
}
if (!other.getDiffusionType().isEmpty()) {
diffusionType_ = other.diffusionType_;
bitField0_ |= 0x00000004;
onChanged();
}
if (atomBuilder_ == null) {
if (!other.atom_.isEmpty()) {
if (atom_.isEmpty()) {
atom_ = other.atom_;
bitField0_ = (bitField0_ & ~0x00000008);
} else {
ensureAtomIsMutable();
atom_.addAll(other.atom_);
}
onChanged();
}
} else {
if (!other.atom_.isEmpty()) {
if (atomBuilder_.isEmpty()) {
atomBuilder_.dispose();
atomBuilder_ = null;
atom_ = other.atom_;
bitField0_ = (bitField0_ & ~0x00000008);
atomBuilder_ =
com.google.protobuf.GeneratedMessageV3.alwaysUseFieldBuilders ?
getAtomFieldBuilder() : null;
} else {
atomBuilder_.addAllMessages(other.atom_);
}
}
}
this.mergeUnknownFields(other.getUnknownFields());
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 9: {
fraction_ = input.readDouble();
bitField0_ |= 0x00000001;
break;
} // case 9
case 17: {
diffusionRate_ = input.readDouble();
bitField0_ |= 0x00000002;
break;
} // case 17
case 26: {
diffusionType_ = input.readStringRequireUtf8();
bitField0_ |= 0x00000004;
break;
} // case 26
case 34: {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom m =
input.readMessage(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.parser(),
extensionRegistry);
if (atomBuilder_ == null) {
ensureAtomIsMutable();
atom_.add(m);
} else {
atomBuilder_.addMessage(m);
}
break;
} // case 34
default: {
if (!super.parseUnknownField(input, extensionRegistry, tag)) {
done = true; // was an endgroup tag
}
break;
} // default:
} // switch (tag)
} // while (!done)
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.unwrapIOException();
} finally {
onChanged();
} // finally
return this;
}
private int bitField0_;
private double fraction_ ;
/**
* double fraction = 1;
* @return The fraction.
*/
@java.lang.Override
public double getFraction() {
return fraction_;
}
/**
* double fraction = 1;
* @param value The fraction to set.
* @return This builder for chaining.
*/
public Builder setFraction(double value) {
fraction_ = value;
bitField0_ |= 0x00000001;
onChanged();
return this;
}
/**
* double fraction = 1;
* @return This builder for chaining.
*/
public Builder clearFraction() {
bitField0_ = (bitField0_ & ~0x00000001);
fraction_ = 0D;
onChanged();
return this;
}
private double diffusionRate_ ;
/**
* double diffusion_rate = 2;
* @return The diffusionRate.
*/
@java.lang.Override
public double getDiffusionRate() {
return diffusionRate_;
}
/**
* double diffusion_rate = 2;
* @param value The diffusionRate to set.
* @return This builder for chaining.
*/
public Builder setDiffusionRate(double value) {
diffusionRate_ = value;
bitField0_ |= 0x00000002;
onChanged();
return this;
}
/**
* double diffusion_rate = 2;
* @return This builder for chaining.
*/
public Builder clearDiffusionRate() {
bitField0_ = (bitField0_ & ~0x00000002);
diffusionRate_ = 0D;
onChanged();
return this;
}
private java.lang.Object diffusionType_ = "";
/**
* string diffusion_type = 3;
* @return The diffusionType.
*/
public java.lang.String getDiffusionType() {
java.lang.Object ref = diffusionType_;
if (!(ref instanceof java.lang.String)) {
com.google.protobuf.ByteString bs =
(com.google.protobuf.ByteString) ref;
java.lang.String s = bs.toStringUtf8();
diffusionType_ = s;
return s;
} else {
return (java.lang.String) ref;
}
}
/**
* string diffusion_type = 3;
* @return The bytes for diffusionType.
*/
public com.google.protobuf.ByteString
getDiffusionTypeBytes() {
java.lang.Object ref = diffusionType_;
if (ref instanceof String) {
com.google.protobuf.ByteString b =
com.google.protobuf.ByteString.copyFromUtf8(
(java.lang.String) ref);
diffusionType_ = b;
return b;
} else {
return (com.google.protobuf.ByteString) ref;
}
}
/**
* string diffusion_type = 3;
* @param value The diffusionType to set.
* @return This builder for chaining.
*/
public Builder setDiffusionType(
java.lang.String value) {
if (value == null) { throw new NullPointerException(); }
diffusionType_ = value;
bitField0_ |= 0x00000004;
onChanged();
return this;
}
/**
* string diffusion_type = 3;
* @return This builder for chaining.
*/
public Builder clearDiffusionType() {
diffusionType_ = getDefaultInstance().getDiffusionType();
bitField0_ = (bitField0_ & ~0x00000004);
onChanged();
return this;
}
/**
* string diffusion_type = 3;
* @param value The bytes for diffusionType to set.
* @return This builder for chaining.
*/
public Builder setDiffusionTypeBytes(
com.google.protobuf.ByteString value) {
if (value == null) { throw new NullPointerException(); }
checkByteStringIsUtf8(value);
diffusionType_ = value;
bitField0_ |= 0x00000004;
onChanged();
return this;
}
private java.util.List atom_ =
java.util.Collections.emptyList();
private void ensureAtomIsMutable() {
if (!((bitField0_ & 0x00000008) != 0)) {
atom_ = new java.util.ArrayList(atom_);
bitField0_ |= 0x00000008;
}
}
private com.google.protobuf.RepeatedFieldBuilderV3<
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.AtomOrBuilder> atomBuilder_;
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public java.util.List getAtomList() {
if (atomBuilder_ == null) {
return java.util.Collections.unmodifiableList(atom_);
} else {
return atomBuilder_.getMessageList();
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public int getAtomCount() {
if (atomBuilder_ == null) {
return atom_.size();
} else {
return atomBuilder_.getCount();
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom getAtom(int index) {
if (atomBuilder_ == null) {
return atom_.get(index);
} else {
return atomBuilder_.getMessage(index);
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder setAtom(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom value) {
if (atomBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureAtomIsMutable();
atom_.set(index, value);
onChanged();
} else {
atomBuilder_.setMessage(index, value);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder setAtom(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder builderForValue) {
if (atomBuilder_ == null) {
ensureAtomIsMutable();
atom_.set(index, builderForValue.build());
onChanged();
} else {
atomBuilder_.setMessage(index, builderForValue.build());
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder addAtom(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom value) {
if (atomBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureAtomIsMutable();
atom_.add(value);
onChanged();
} else {
atomBuilder_.addMessage(value);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder addAtom(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom value) {
if (atomBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureAtomIsMutable();
atom_.add(index, value);
onChanged();
} else {
atomBuilder_.addMessage(index, value);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder addAtom(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder builderForValue) {
if (atomBuilder_ == null) {
ensureAtomIsMutable();
atom_.add(builderForValue.build());
onChanged();
} else {
atomBuilder_.addMessage(builderForValue.build());
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder addAtom(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder builderForValue) {
if (atomBuilder_ == null) {
ensureAtomIsMutable();
atom_.add(index, builderForValue.build());
onChanged();
} else {
atomBuilder_.addMessage(index, builderForValue.build());
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder addAllAtom(
java.lang.Iterable values) {
if (atomBuilder_ == null) {
ensureAtomIsMutable();
com.google.protobuf.AbstractMessageLite.Builder.addAll(
values, atom_);
onChanged();
} else {
atomBuilder_.addAllMessages(values);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder clearAtom() {
if (atomBuilder_ == null) {
atom_ = java.util.Collections.emptyList();
bitField0_ = (bitField0_ & ~0x00000008);
onChanged();
} else {
atomBuilder_.clear();
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public Builder removeAtom(int index) {
if (atomBuilder_ == null) {
ensureAtomIsMutable();
atom_.remove(index);
onChanged();
} else {
atomBuilder_.remove(index);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder getAtomBuilder(
int index) {
return getAtomFieldBuilder().getBuilder(index);
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.AtomOrBuilder getAtomOrBuilder(
int index) {
if (atomBuilder_ == null) {
return atom_.get(index); } else {
return atomBuilder_.getMessageOrBuilder(index);
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public java.util.List
getAtomOrBuilderList() {
if (atomBuilder_ != null) {
return atomBuilder_.getMessageOrBuilderList();
} else {
return java.util.Collections.unmodifiableList(atom_);
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder addAtomBuilder() {
return getAtomFieldBuilder().addBuilder(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.getDefaultInstance());
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder addAtomBuilder(
int index) {
return getAtomFieldBuilder().addBuilder(
index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.getDefaultInstance());
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Atom atom = 4;
*/
public java.util.List
getAtomBuilderList() {
return getAtomFieldBuilder().getBuilderList();
}
private com.google.protobuf.RepeatedFieldBuilderV3<
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.AtomOrBuilder>
getAtomFieldBuilder() {
if (atomBuilder_ == null) {
atomBuilder_ = new com.google.protobuf.RepeatedFieldBuilderV3<
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Atom.Builder, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.AtomOrBuilder>(
atom_,
((bitField0_ & 0x00000008) != 0),
getParentForChildren(),
isClean());
atom_ = null;
}
return atomBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:uk.ac.sussex.gdsc.smlm.data.config.Molecule)
}
// @@protoc_insertion_point(class_scope:uk.ac.sussex.gdsc.smlm.data.config.Molecule)
private static final uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule();
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public Molecule parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
Builder builder = newBuilder();
try {
builder.mergeFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(builder.buildPartial());
} catch (com.google.protobuf.UninitializedMessageException e) {
throw e.asInvalidProtocolBufferException().setUnfinishedMessage(builder.buildPartial());
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(e)
.setUnfinishedMessage(builder.buildPartial());
}
return builder.buildPartial();
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
public interface MixtureOrBuilder extends
// @@protoc_insertion_point(interface_extends:uk.ac.sussex.gdsc.smlm.data.config.Mixture)
com.google.protobuf.MessageOrBuilder {
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
java.util.List
getMoleculeList();
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule getMolecule(int index);
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
int getMoleculeCount();
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
java.util.List
getMoleculeOrBuilderList();
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MoleculeOrBuilder getMoleculeOrBuilder(
int index);
}
/**
* Protobuf type {@code uk.ac.sussex.gdsc.smlm.data.config.Mixture}
*/
public static final class Mixture extends
com.google.protobuf.GeneratedMessageV3 implements
// @@protoc_insertion_point(message_implements:uk.ac.sussex.gdsc.smlm.data.config.Mixture)
MixtureOrBuilder {
private static final long serialVersionUID = 0L;
// Use Mixture.newBuilder() to construct.
private Mixture(com.google.protobuf.GeneratedMessageV3.Builder builder) {
super(builder);
}
private Mixture() {
molecule_ = java.util.Collections.emptyList();
}
@java.lang.Override
@SuppressWarnings({"unused"})
protected java.lang.Object newInstance(
UnusedPrivateParameter unused) {
return new Mixture();
}
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_fieldAccessorTable
.ensureFieldAccessorsInitialized(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture.class, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture.Builder.class);
}
public static final int MOLECULE_FIELD_NUMBER = 1;
@SuppressWarnings("serial")
private java.util.List molecule_;
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
@java.lang.Override
public java.util.List getMoleculeList() {
return molecule_;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
@java.lang.Override
public java.util.List
getMoleculeOrBuilderList() {
return molecule_;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
@java.lang.Override
public int getMoleculeCount() {
return molecule_.size();
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule getMolecule(int index) {
return molecule_.get(index);
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MoleculeOrBuilder getMoleculeOrBuilder(
int index) {
return molecule_.get(index);
}
private byte memoizedIsInitialized = -1;
@java.lang.Override
public final boolean isInitialized() {
byte isInitialized = memoizedIsInitialized;
if (isInitialized == 1) return true;
if (isInitialized == 0) return false;
memoizedIsInitialized = 1;
return true;
}
@java.lang.Override
public void writeTo(com.google.protobuf.CodedOutputStream output)
throws java.io.IOException {
for (int i = 0; i < molecule_.size(); i++) {
output.writeMessage(1, molecule_.get(i));
}
getUnknownFields().writeTo(output);
}
@java.lang.Override
public int getSerializedSize() {
int size = memoizedSize;
if (size != -1) return size;
size = 0;
for (int i = 0; i < molecule_.size(); i++) {
size += com.google.protobuf.CodedOutputStream
.computeMessageSize(1, molecule_.get(i));
}
size += getUnknownFields().getSerializedSize();
memoizedSize = size;
return size;
}
@java.lang.Override
public boolean equals(final java.lang.Object obj) {
if (obj == this) {
return true;
}
if (!(obj instanceof uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture)) {
return super.equals(obj);
}
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture other = (uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture) obj;
if (!getMoleculeList()
.equals(other.getMoleculeList())) return false;
if (!getUnknownFields().equals(other.getUnknownFields())) return false;
return true;
}
@java.lang.Override
public int hashCode() {
if (memoizedHashCode != 0) {
return memoizedHashCode;
}
int hash = 41;
hash = (19 * hash) + getDescriptor().hashCode();
if (getMoleculeCount() > 0) {
hash = (37 * hash) + MOLECULE_FIELD_NUMBER;
hash = (53 * hash) + getMoleculeList().hashCode();
}
hash = (29 * hash) + getUnknownFields().hashCode();
memoizedHashCode = hash;
return hash;
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
java.nio.ByteBuffer data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
java.nio.ByteBuffer data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
com.google.protobuf.ByteString data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
com.google.protobuf.ByteString data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(byte[] data)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
byte[] data,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
return PARSER.parseFrom(data, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseDelimitedFrom(java.io.InputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseDelimitedFrom(
java.io.InputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseDelimitedWithIOException(PARSER, input, extensionRegistry);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
com.google.protobuf.CodedInputStream input)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input);
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture parseFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
return com.google.protobuf.GeneratedMessageV3
.parseWithIOException(PARSER, input, extensionRegistry);
}
@java.lang.Override
public Builder newBuilderForType() { return newBuilder(); }
public static Builder newBuilder() {
return DEFAULT_INSTANCE.toBuilder();
}
public static Builder newBuilder(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture prototype) {
return DEFAULT_INSTANCE.toBuilder().mergeFrom(prototype);
}
@java.lang.Override
public Builder toBuilder() {
return this == DEFAULT_INSTANCE
? new Builder() : new Builder().mergeFrom(this);
}
@java.lang.Override
protected Builder newBuilderForType(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
Builder builder = new Builder(parent);
return builder;
}
/**
* Protobuf type {@code uk.ac.sussex.gdsc.smlm.data.config.Mixture}
*/
public static final class Builder extends
com.google.protobuf.GeneratedMessageV3.Builder implements
// @@protoc_insertion_point(builder_implements:uk.ac.sussex.gdsc.smlm.data.config.Mixture)
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MixtureOrBuilder {
public static final com.google.protobuf.Descriptors.Descriptor
getDescriptor() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_descriptor;
}
@java.lang.Override
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internalGetFieldAccessorTable() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_fieldAccessorTable
.ensureFieldAccessorsInitialized(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture.class, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture.Builder.class);
}
// Construct using uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture.newBuilder()
private Builder() {
}
private Builder(
com.google.protobuf.GeneratedMessageV3.BuilderParent parent) {
super(parent);
}
@java.lang.Override
public Builder clear() {
super.clear();
bitField0_ = 0;
if (moleculeBuilder_ == null) {
molecule_ = java.util.Collections.emptyList();
} else {
molecule_ = null;
moleculeBuilder_.clear();
}
bitField0_ = (bitField0_ & ~0x00000001);
return this;
}
@java.lang.Override
public com.google.protobuf.Descriptors.Descriptor
getDescriptorForType() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_descriptor;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture getDefaultInstanceForType() {
return uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture.getDefaultInstance();
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture build() {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture result = buildPartial();
if (!result.isInitialized()) {
throw newUninitializedMessageException(result);
}
return result;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture buildPartial() {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture result = new uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture(this);
buildPartialRepeatedFields(result);
if (bitField0_ != 0) { buildPartial0(result); }
onBuilt();
return result;
}
private void buildPartialRepeatedFields(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture result) {
if (moleculeBuilder_ == null) {
if (((bitField0_ & 0x00000001) != 0)) {
molecule_ = java.util.Collections.unmodifiableList(molecule_);
bitField0_ = (bitField0_ & ~0x00000001);
}
result.molecule_ = molecule_;
} else {
result.molecule_ = moleculeBuilder_.build();
}
}
private void buildPartial0(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture result) {
int from_bitField0_ = bitField0_;
}
@java.lang.Override
public Builder mergeFrom(com.google.protobuf.Message other) {
if (other instanceof uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture) {
return mergeFrom((uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture)other);
} else {
super.mergeFrom(other);
return this;
}
}
public Builder mergeFrom(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture other) {
if (other == uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture.getDefaultInstance()) return this;
if (moleculeBuilder_ == null) {
if (!other.molecule_.isEmpty()) {
if (molecule_.isEmpty()) {
molecule_ = other.molecule_;
bitField0_ = (bitField0_ & ~0x00000001);
} else {
ensureMoleculeIsMutable();
molecule_.addAll(other.molecule_);
}
onChanged();
}
} else {
if (!other.molecule_.isEmpty()) {
if (moleculeBuilder_.isEmpty()) {
moleculeBuilder_.dispose();
moleculeBuilder_ = null;
molecule_ = other.molecule_;
bitField0_ = (bitField0_ & ~0x00000001);
moleculeBuilder_ =
com.google.protobuf.GeneratedMessageV3.alwaysUseFieldBuilders ?
getMoleculeFieldBuilder() : null;
} else {
moleculeBuilder_.addAllMessages(other.molecule_);
}
}
}
this.mergeUnknownFields(other.getUnknownFields());
onChanged();
return this;
}
@java.lang.Override
public final boolean isInitialized() {
return true;
}
@java.lang.Override
public Builder mergeFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws java.io.IOException {
if (extensionRegistry == null) {
throw new java.lang.NullPointerException();
}
try {
boolean done = false;
while (!done) {
int tag = input.readTag();
switch (tag) {
case 0:
done = true;
break;
case 10: {
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule m =
input.readMessage(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.parser(),
extensionRegistry);
if (moleculeBuilder_ == null) {
ensureMoleculeIsMutable();
molecule_.add(m);
} else {
moleculeBuilder_.addMessage(m);
}
break;
} // case 10
default: {
if (!super.parseUnknownField(input, extensionRegistry, tag)) {
done = true; // was an endgroup tag
}
break;
} // default:
} // switch (tag)
} // while (!done)
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.unwrapIOException();
} finally {
onChanged();
} // finally
return this;
}
private int bitField0_;
private java.util.List molecule_ =
java.util.Collections.emptyList();
private void ensureMoleculeIsMutable() {
if (!((bitField0_ & 0x00000001) != 0)) {
molecule_ = new java.util.ArrayList(molecule_);
bitField0_ |= 0x00000001;
}
}
private com.google.protobuf.RepeatedFieldBuilderV3<
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MoleculeOrBuilder> moleculeBuilder_;
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public java.util.List getMoleculeList() {
if (moleculeBuilder_ == null) {
return java.util.Collections.unmodifiableList(molecule_);
} else {
return moleculeBuilder_.getMessageList();
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public int getMoleculeCount() {
if (moleculeBuilder_ == null) {
return molecule_.size();
} else {
return moleculeBuilder_.getCount();
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule getMolecule(int index) {
if (moleculeBuilder_ == null) {
return molecule_.get(index);
} else {
return moleculeBuilder_.getMessage(index);
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder setMolecule(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule value) {
if (moleculeBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureMoleculeIsMutable();
molecule_.set(index, value);
onChanged();
} else {
moleculeBuilder_.setMessage(index, value);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder setMolecule(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder builderForValue) {
if (moleculeBuilder_ == null) {
ensureMoleculeIsMutable();
molecule_.set(index, builderForValue.build());
onChanged();
} else {
moleculeBuilder_.setMessage(index, builderForValue.build());
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder addMolecule(uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule value) {
if (moleculeBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureMoleculeIsMutable();
molecule_.add(value);
onChanged();
} else {
moleculeBuilder_.addMessage(value);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder addMolecule(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule value) {
if (moleculeBuilder_ == null) {
if (value == null) {
throw new NullPointerException();
}
ensureMoleculeIsMutable();
molecule_.add(index, value);
onChanged();
} else {
moleculeBuilder_.addMessage(index, value);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder addMolecule(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder builderForValue) {
if (moleculeBuilder_ == null) {
ensureMoleculeIsMutable();
molecule_.add(builderForValue.build());
onChanged();
} else {
moleculeBuilder_.addMessage(builderForValue.build());
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder addMolecule(
int index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder builderForValue) {
if (moleculeBuilder_ == null) {
ensureMoleculeIsMutable();
molecule_.add(index, builderForValue.build());
onChanged();
} else {
moleculeBuilder_.addMessage(index, builderForValue.build());
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder addAllMolecule(
java.lang.Iterable values) {
if (moleculeBuilder_ == null) {
ensureMoleculeIsMutable();
com.google.protobuf.AbstractMessageLite.Builder.addAll(
values, molecule_);
onChanged();
} else {
moleculeBuilder_.addAllMessages(values);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder clearMolecule() {
if (moleculeBuilder_ == null) {
molecule_ = java.util.Collections.emptyList();
bitField0_ = (bitField0_ & ~0x00000001);
onChanged();
} else {
moleculeBuilder_.clear();
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public Builder removeMolecule(int index) {
if (moleculeBuilder_ == null) {
ensureMoleculeIsMutable();
molecule_.remove(index);
onChanged();
} else {
moleculeBuilder_.remove(index);
}
return this;
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder getMoleculeBuilder(
int index) {
return getMoleculeFieldBuilder().getBuilder(index);
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MoleculeOrBuilder getMoleculeOrBuilder(
int index) {
if (moleculeBuilder_ == null) {
return molecule_.get(index); } else {
return moleculeBuilder_.getMessageOrBuilder(index);
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public java.util.List
getMoleculeOrBuilderList() {
if (moleculeBuilder_ != null) {
return moleculeBuilder_.getMessageOrBuilderList();
} else {
return java.util.Collections.unmodifiableList(molecule_);
}
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder addMoleculeBuilder() {
return getMoleculeFieldBuilder().addBuilder(
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.getDefaultInstance());
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder addMoleculeBuilder(
int index) {
return getMoleculeFieldBuilder().addBuilder(
index, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.getDefaultInstance());
}
/**
* repeated .uk.ac.sussex.gdsc.smlm.data.config.Molecule molecule = 1;
*/
public java.util.List
getMoleculeBuilderList() {
return getMoleculeFieldBuilder().getBuilderList();
}
private com.google.protobuf.RepeatedFieldBuilderV3<
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MoleculeOrBuilder>
getMoleculeFieldBuilder() {
if (moleculeBuilder_ == null) {
moleculeBuilder_ = new com.google.protobuf.RepeatedFieldBuilderV3<
uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Molecule.Builder, uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.MoleculeOrBuilder>(
molecule_,
((bitField0_ & 0x00000001) != 0),
getParentForChildren(),
isClean());
molecule_ = null;
}
return moleculeBuilder_;
}
@java.lang.Override
public final Builder setUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.setUnknownFields(unknownFields);
}
@java.lang.Override
public final Builder mergeUnknownFields(
final com.google.protobuf.UnknownFieldSet unknownFields) {
return super.mergeUnknownFields(unknownFields);
}
// @@protoc_insertion_point(builder_scope:uk.ac.sussex.gdsc.smlm.data.config.Mixture)
}
// @@protoc_insertion_point(class_scope:uk.ac.sussex.gdsc.smlm.data.config.Mixture)
private static final uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture DEFAULT_INSTANCE;
static {
DEFAULT_INSTANCE = new uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture();
}
public static uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture getDefaultInstance() {
return DEFAULT_INSTANCE;
}
private static final com.google.protobuf.Parser
PARSER = new com.google.protobuf.AbstractParser() {
@java.lang.Override
public Mixture parsePartialFrom(
com.google.protobuf.CodedInputStream input,
com.google.protobuf.ExtensionRegistryLite extensionRegistry)
throws com.google.protobuf.InvalidProtocolBufferException {
Builder builder = newBuilder();
try {
builder.mergeFrom(input, extensionRegistry);
} catch (com.google.protobuf.InvalidProtocolBufferException e) {
throw e.setUnfinishedMessage(builder.buildPartial());
} catch (com.google.protobuf.UninitializedMessageException e) {
throw e.asInvalidProtocolBufferException().setUnfinishedMessage(builder.buildPartial());
} catch (java.io.IOException e) {
throw new com.google.protobuf.InvalidProtocolBufferException(e)
.setUnfinishedMessage(builder.buildPartial());
}
return builder.buildPartial();
}
};
public static com.google.protobuf.Parser parser() {
return PARSER;
}
@java.lang.Override
public com.google.protobuf.Parser getParserForType() {
return PARSER;
}
@java.lang.Override
public uk.ac.sussex.gdsc.smlm.data.config.MoleculeProtos.Mixture getDefaultInstanceForType() {
return DEFAULT_INSTANCE;
}
}
private static final com.google.protobuf.Descriptors.Descriptor
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_descriptor;
private static final
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_fieldAccessorTable;
private static final com.google.protobuf.Descriptors.Descriptor
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_descriptor;
private static final
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_fieldAccessorTable;
private static final com.google.protobuf.Descriptors.Descriptor
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_descriptor;
private static final
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_fieldAccessorTable;
public static com.google.protobuf.Descriptors.FileDescriptor
getDescriptor() {
return descriptor;
}
private static com.google.protobuf.Descriptors.FileDescriptor
descriptor;
static {
java.lang.String[] descriptorData = {
"\n1uk/ac/sussex/gdsc/smlm/data/config/mol" +
"ecule.proto\022\"uk.ac.sussex.gdsc.smlm.data" +
".config\"5\n\004Atom\022\014\n\004mass\030\001 \001(\001\022\t\n\001x\030\002 \001(\001" +
"\022\t\n\001y\030\003 \001(\001\022\t\n\001z\030\004 \001(\001\"\204\001\n\010Molecule\022\020\n\010f" +
"raction\030\001 \001(\001\022\026\n\016diffusion_rate\030\002 \001(\001\022\026\n" +
"\016diffusion_type\030\003 \001(\t\0226\n\004atom\030\004 \003(\0132(.uk" +
".ac.sussex.gdsc.smlm.data.config.Atom\"I\n" +
"\007Mixture\022>\n\010molecule\030\001 \003(\0132,.uk.ac.susse" +
"x.gdsc.smlm.data.config.MoleculeB\020B\016Mole" +
"culeProtosb\006proto3"
};
descriptor = com.google.protobuf.Descriptors.FileDescriptor
.internalBuildGeneratedFileFrom(descriptorData,
new com.google.protobuf.Descriptors.FileDescriptor[] {
});
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_descriptor =
getDescriptor().getMessageTypes().get(0);
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Atom_descriptor,
new java.lang.String[] { "Mass", "X", "Y", "Z", });
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_descriptor =
getDescriptor().getMessageTypes().get(1);
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Molecule_descriptor,
new java.lang.String[] { "Fraction", "DiffusionRate", "DiffusionType", "Atom", });
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_descriptor =
getDescriptor().getMessageTypes().get(2);
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_fieldAccessorTable = new
com.google.protobuf.GeneratedMessageV3.FieldAccessorTable(
internal_static_uk_ac_sussex_gdsc_smlm_data_config_Mixture_descriptor,
new java.lang.String[] { "Molecule", });
}
// @@protoc_insertion_point(outer_class_scope)
}
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