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Genome Damage and Stability Centre SMLM Package Software for single molecule localisation microscopy (SMLM)

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syntax = "proto3";

// ProtoBuffer description file for serialising molecules in CreateData
// Authors: Alex Herbert, 2017
// License: GPL V3
package uk.ac.sussex.gdsc.smlm.data.config;

option java_outer_classname = "MoleculeProtos";

// Repeated fields use a non-pleural name for clarity in the Message.toString() method

message Atom {
  double mass = 1;
  double x = 2;
  double y = 3;
  double z = 4;
}

message Molecule {
  double fraction = 1;
  double diffusion_rate = 2;
  string diffusion_type = 3;
  repeated Atom atom = 4;
}

message Mixture {
  repeated Molecule molecule = 1;
}