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Genome Damage and Stability Centre SMLM Package
Software for single molecule localisation microscopy (SMLM)
The newest version!
/*-
* #%L
* Genome Damage and Stability Centre SMLM Package
*
* Software for single molecule localisation microscopy (SMLM)
* %%
* Copyright (C) 2011 - 2023 Alex Herbert
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* .
* #L%
*/
package uk.ac.sussex.gdsc.smlm.results.count;
/**
* Stop evaluating when a number of cumulative failures occurs. The counting is weighted so that
* fails increment and passes decrement different amounts.
*/
public final class WeightedFailCounter extends BaseFailCounter {
/** The fail count. Use a long to avoid overflow errors. */
private long failCount;
/** The number of allowed failures. */
private final int allowedFailures;
/** The amount to increment for a fail. */
private final int failIncrement;
/** The amount to decrement for a pass. */
private final int passDecrement;
/**
* Instantiates a new weighted fail counter.
*
* @param allowedFailures the number of allowed failures
* @param failIncrement the fail increment
* @param passDecrement the pass decrement
*/
private WeightedFailCounter(int allowedFailures, int failIncrement, int passDecrement) {
this.allowedFailures = allowedFailures;
this.failIncrement = failIncrement;
this.passDecrement = passDecrement;
}
@Override
protected String generateDescription() {
return String.format("weightedFailures=%d;fail+%d;pass-%d", allowedFailures, failIncrement,
passDecrement);
}
/**
* Instantiates a new weighted fail counter.
*
* @param allowedFailures the number of allowed failures
* @param failIncrement the amount to increment for a fail (set to 1 if below 1)
* @param passDecrement the amount to decrement for a pass (set to 0 if below 0)
* @return the weighted fail counter
*/
public static WeightedFailCounter create(int allowedFailures, int failIncrement,
int passDecrement) {
return new WeightedFailCounter(Math.max(0, allowedFailures), Math.max(1, failIncrement),
Math.max(0, passDecrement));
}
@Override
public void pass() {
failCount -= passDecrement;
if (failCount < 0L) {
failCount = 0L;
}
}
@Override
public void pass(int n) {
if (n < 0) {
throw new IllegalArgumentException("Number of passes must be positive");
}
failCount -= (long) n * passDecrement;
if (failCount < 0L) {
failCount = 0L;
}
}
@Override
public void fail() {
failCount += failIncrement;
if (failCount < 0L) {
throw new IllegalStateException("Unable to increment");
}
}
@Override
public void fail(int n) {
if (n < 0) {
throw new IllegalArgumentException("Number of fails must be positive");
}
failCount += (long) n * failIncrement;
if (failCount < 0L) {
throw new IllegalStateException("Unable to increment");
}
}
@Override
public boolean isOk() {
return failCount <= allowedFailures;
}
@Override
public FailCounter newCounter() {
return new WeightedFailCounter(allowedFailures, failIncrement, passDecrement);
}
@Override
public void reset() {
failCount = 0L;
}
/**
* Gets the fail count.
*
* @return the fail count
*/
public long getFailCount() {
return failCount;
}
/**
* Gets the number of allowed failures.
*
* @return the number of allowed failures.
*/
public int getAllowedFailures() {
return allowedFailures;
}
/**
* Gets the amount to increment for a fail.
*
* @return the fail increment
*/
public int getFailIncrement() {
return failIncrement;
}
/**
* Gets the amount to decrement for a pass.
*
* @return the pass decrement
*/
public int getPassDecrement() {
return passDecrement;
}
}
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