Download JAR files tagged by archives with all dependencies

The enhanced OAI server is a Java Servlet web application that implements the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) v2.0. It is based on OAICat (http://oclc.org/research/activities/oaicat.html) and the Biblio Transformation Engine (https://github.com/EKT/Biblio-Transformation-Engine). More than the flexibility it allows with BTE (custom filter and modifiers), it allows the administrator to define metadata mappings using XSLTs and that way to support easily more metadata formats.

The Systems Biology Simulation Core Library provides an efficient and exhaustive Java™ implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project. It can be used on every operating system for which a Java Virtual Machine is available. Version 2.0 and beyond support simulation in three frameworks: constraint-based analysis, stochastic simulation, and ordinary differential equation systems. SBSCL supports SED-ML and COMBINE archives in OMEX format.

The Java JDK includes various means of creating/consuming compressed files. What is missing is easy way of creating lazy streamed zip archive, in spirit of java.util.zip.DeflaterInputStream. This implementation relies on the fact that the PKZIP specification allows archiving data streams of sizes not known upfront. This implies that the archives produced will be readable only by tools aware of this trick. Notably, java.util.zip.ZipInputStream is OK with that, so we use it to test compatibility.

EasyConfig provides simple way to overview and apply settings to file or folder based collections of files. Synonyms to "setting" are property, attribute, value while throughout application "setting" is used. The settings are groupped in "configuration" that is collection of settings from various sources. Main design concepts are: * minimalistic way to describe configuration * pluggable support for data types (validation), setting sources, source handlers Sample use case: An application is deployed in multiple locations. We need to quickly check key settings/parameters and optionally modify some of them. These values are located in different places: - in files directly in file structure - in files inside archive files (optionally nested archives) - values in DB tables - values accessible via URLs - other sources (just guessed: SSH/telnet connection+some command(s), UPnP devices, proprietary protocols, etc) We gather info from any supported (extendable) source and can modify and apply changes if supported by source (e.g. we can't update value that is count of rows in DB table, but we can read that value).