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Dyndns JMCE is an application deployed to a JMCE server whose purpose is to login to a Dyndns account because if that's not done on a regular basis the account gets deleted. MAVEN: mvn [-DskipTests] clean site package NOTES: After unzipping the binary on the JMCE server, make sure to copy the ferris-dyndns-jmce-private-0.0.1.jar to /bin so the app has the username/passwords it needs. 0.0.2: Changed project name from ferris-jmce-dyndns to ferris-dyndns-jmce Removed java.util.logging.Logger for Log4j Split into muli-module project 0.0.3: Update screen scrape based on changes to the dyndns website. 0.0.4: Update screen scrape (again) based on changes to the dyndns website. Changed parent to "ferris-standard-project" 0.0.5: - Update screen scrape (again) based on changes to the dyndns website. - Update pom.xml configuration to be in line with new parent pom. - Update project site

Avalon Excalibur's resource management code allows you to be notified when a resource has changed. There are two methods of resource management: active and passive. Passive resource management acts as a holder for resources, and after the resource has been modified through it's normal API, notification goes to all listeners. Active resource management does the same, but it also polls the resources periodically to see if the resource was modified through an external method. Active resource management is perfect for monitoring files because they can be modified by external programs, and your program will be notified when the change occurs instead of constantly polling it.

This module defines the interface for AlignmentAlgorithms as well as some helper classes. An AlignmentAlgorithm computes an Alignment of two given input sequences, given a Comparator that works in these sequences. More details on the AlignmentAlgorithm can be found in the respective interface. More information on Comparators can be found in the comparators module. The resulting 'Alignment' may be just a real-valued dissimilarity between the input sequence or may incorporate additional information, such as a full Alignment, a PathList, a PathMap or a CooptimalModel. If those results support the calculation of a Gradient, they implement the DerivableAlignmentDistance interface. In more detail, the Alignment class represents the result of a backtracing scheme, listing all Operations that have been applied in one co-optimal Alignment. A classic AlignmentAlgorithm does not result in a differentiable dissimilarity, because the minimum function is not differentiable. Therefore, this package also contains utility functions for a soft approximation of the minimum function, namely Softmin. For faster (parallel) computation of many different alignments or gradients we also provide the ParallelProcessingEngine, the SquareParallelProcessingEngine and the ParallelGradientEngine.

--------------------------------------------------------------------------- Version for VIVO 1.8 This uses the source and test code from the Version for VIVO 1.10, edited to make it compatible with VIVO 1.8. It also borrows some code from VIVO 1.10 itself, changes the package name to avoid conflicts, and adds it here. * Vitro 1.8 uses Jena 2, not Jena 3, and Commons Lang 2, not 3, so modify the "import" statements in the Data Distribution code accordingly. * Vitro 1.8 does not have a "...webapp.utils.sparqlrunner" package, so borrow the source from Vitro 1.10, move it to a different package (just for compatibility with the 1.9 version), modify it to use Jena 2 and Commons Lang 2, and modify the Data Distribution API code to use this sparqlrunner package. * Vitro 1.9 has an earlier version of "...webapp.utils.configuration" package, so borrow the source from Vitro 1.10, move it to a different package so it won't conflict with the 1.9 version, modify it to use Jena 2 and Commons Lang 2, and modify the Data Distribution API code to use this configuration package. Make these modifications, compile, JAR it up, and deploy. --------------------------------------------------------------------------- Because VIVO 1.8 is not available as a Maven package, we have extracted the class files, JARed them up, and stored them in a file-based repository within this project. But that doesn't include any transitive dependencies, so any package that this code requires must be explicitly listed as a dependency. ---------------------------------------------------------------------------

Sirix is a versioned, treebased storage system. It provides an ID-less diff-algorithm to import differences between two versions. Furthermore an ID-based diff-algorithm facilitates the comparison of versions stored within Sirix. A GUI with several visualizations for comparing these versions visually is available to aid an analyst. Versions are stored using well known versioning strategies (full, incremental, differential). The architecture is especially well suited for flash-disks because of a COW-principle. In the future we aim to provide throughout security as well as a replaced page-structure to speedup our architecture. A brackit(.org) binding will enable XQuery and the XQuery Update Facility. Temporal XPath axis and possibly diff-functions will help analysts to gain quick knowledge from the stored data.

Sirix is a versioned, treebased storage system. It provides an ID-less diff-algorithm to import differences between two versions (currently XML-documents). Furthermore an ID-based diff-algorithm facilitates the comparison of versions stored within Sirix. A GUI with several visualizations for comparing these versions visually is available to aid an analyst. Versions are stored using well known versioning strategies (full, incremental, differential). The architecture is especially well suited for flash-disks because of a COW-principle. In the future we aim to provide throughout security as well as a replaced page-structure to speedup our architecture. A brackit(.org) binding will enable XQuery and the XQuery Update Facility. Temporal XPath axis and possibly diff-functions will help analysts to gain quick knowledge from the stored data.

GlassFish build depends on properly functioning several custom lifecycle mappings and artifact handlers. Because these are necessary to resolve dependencies and to run "gf:run" goal and etc., it is critical that these extensions be made available to Maven early on during Maven execution. This definition was originally in maven-glassfish-plugin, which was integrated into Maven POM through <plugin>/<extensions>true marking, but after a series of debugging to resolve artifact resolution failure problems, it turns out that that doesn't cause Maven to load components early enough. I tried to circumbent the prolem by also registering the maven-glassfish-plugin as an extension module (via <build>/<extensions/<extension>), but that apparently confuses Maven to no end --- I get build errors like this: [INFO] Internal error in the plugin manager executing goal 'org.apache.maven.plugins:maven-jar-plugin:2.1:jar': Unable to find the mojo 'org.apache.maven.plugins:maven-jar-plugin:2.1:jar' in the plugin 'org.apache.maven.plugins:maven-jar-plugin' This is obviously one of the problematic areas of Maven, so to avoid doing hack over hack, I'm simply moving the component definitions to its own module.

GlassFish build depends on properly functioning several custom lifecycle mappings and artifact handlers. Because these are necessary to resolve dependencies and to run "gf:run" goal and etc., it is critical that these extensions be made available to Maven early on during Maven execution. This definition was originally in maven-glassfish-plugin, which was integrated into Maven POM through <plugin>/<extensions>true marking, but after a series of debugging to resolve artifact resolution failure problems, it turns out that that doesn't cause Maven to load components early enough. I tried to circumbent the prolem by also registering the maven-glassfish-plugin as an extension module (via <build>/<extensions/<extension>), but that apparently confuses Maven to no end --- I get build errors like this: [INFO] Internal error in the plugin manager executing goal 'org.apache.maven.plugins:maven-jar-plugin:2.1:jar': Unable to find the mojo 'org.apache.maven.plugins:maven-jar-plugin:2.1:jar' in the plugin 'org.apache.maven.plugins:maven-jar-plugin' This is obviously one of the problematic areas of Maven, so to avoid doing hack over hack, I'm simply moving the component definitions to its own module.

Jsgen is a Java Source Generation Framework: That means, it should be a valuable tool, if you intend to write a custom generator for Java sources. As such, it is the successor of a previous framework, called JaxMeJS (http://jaxme.sourceforge.net/JaxMeJS/docs/index.html). The predecessor came into being as a standalone project. It was incorporated into the bigger JaxMe project, when the latter was adopted by the Apache Webservices project. And it was buried as part of the bigger project, when the latter was moved to the Apache Attic (http://svn.apache.org/repos/asf/webservices/archive/jaxme/). That was fine for quite some time, because the latest released version (JaxMeJS 0.5.2) did its job quite well. Over the years, however, the Java language has evolved, and the lack of support for features like Generics, or Annotations, became a burden. Hence the Successor: Jsgen picks up, where JaxMeJS ended. It is, however, a complete rewrite with several additional features, that the author considers to be important for modern Java applications: 1. It supports Generics. 2. It supports Annotations. 3. The builder pattern has been adopted. Almost all important classes are implemented as builders. This should make writing the actual source generators much more concise, and maintainable, than it used to be before. 4. The code style is configurable. Code styles allow you to concentrate on the actual work. The resulting Jave source will look nicely formatted, anyways. As of this writing, you can select between two builtin code styles: - The default code style is basically the authors personal free style, roughly comparable to the default code style of the Eclipse Java IDE. - As an alternative, there is also a Maven code style, which is widely used in the Open Source communities. Compared to the default style, it is less concise, if not even a bit verbose. On the other hand, it is widely adopted by projects in the vicinity of {{{https://maven.apache.org}Apache Maven}}. 5. Import lists are created, and sorted, automatically.

The OODT grid services (product and profile services) use CORBA or RMI as their underlying network transport. However, limitations of CORBA and RMI make them inappropriate for large-scale deployments. For one, both are procedural mechanisms, providing a remote interface that resembles a method call. This makes streaming of data from a service impossible, because there are limitations to the sizes of data structures that can be passed over a remote method call. Instead, repeated calls must be made to retrieve each block of a product, making transfer speeds horribly slow compared to HTTP or FTP. (Block-based retrieval of profiles was never implemented, resulting in out of memory conditions for large profile results, which is another problem.) Second, both CORBA and RMI rely on a central name registry. The registry makes an object independent of its network location, enabling a client to call it by name (looking up its last known location in the registry). However, this requires that server objects be able to make outbound network calls to the registry (through any outbound firewall), and that the registry accept those registrations (through any inbound firewall). This required administrative action at institutions hosting server objects and at the institution hosting the registry. Often, these firewall exceptions would change without notice as system adminstrators changed at each location (apparently firewall exceptions are poorly documented everywhere). Further, in the two major deployments of OODT (PDS and EDRN), server objects have almost never moved, nullifying any benefit of the registry. This project, OODT Web Grid Services, avoids the prolems of CORBA and RMI by using HTTP as the transport mechanism for products and profiles. Further, it provides a password-protected mechanism to add new sets of product and profile query handlers, enabling seamless activation of additional capabilities.