Download JAR files tagged by biomedical with all dependencies

robot-command from group org.obolibrary.robot (version 1.9.6)

Command-line interface for ROBOT: Commands for working with OWL ontologies, especially Open Biological and Biomedical Ontologes (OBO).

Group: org.obolibrary.robot Artifact: robot-command
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Artifact robot-command
Group org.obolibrary.robot
Version 1.9.6
Last update 28. May 2024
Organization not specified
URL Not specified
License not specified
Dependencies amount 5
Dependencies javax.inject, caffeine, robot-core, commons-cli, commons-io,
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robot-maven-plugin from group org.obolibrary.robot (version 1.9.6)

Group: org.obolibrary.robot Artifact: robot-maven-plugin
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Artifact robot-maven-plugin
Group org.obolibrary.robot
Version 1.9.6
Last update 28. May 2024
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies maven-plugin-api,
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robot from group org.obolibrary.robot (version 1.9.6)

ROBOT is an OBO Tool: A library and command-line tool for working with OWL ontologies, especially Open Biological and Biomedical Ontologes (OBO).

Group: org.obolibrary.robot Artifact: robot
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Artifact robot
Group org.obolibrary.robot
Version 1.9.6
Last update 28. May 2024
Organization not specified
URL https://github.com/ontodev/robot
License The 3-Clause BSD License
Dependencies amount 10
Dependencies guava, owlapi-api, owlapi-apibinding, owlapi-rio, junit, logback-classic, log4j-over-slf4j, elk-owlapi, org.semanticweb.hermit, jfact,
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jcore-lingscope-ae from group de.julielab (version 2.6.1)

This component marks spans of biomedical text to lie in the scope of a negation or hedge. The Lingscope (https://sourceforge.net/projects/lingscope/) algorithm is used to do this.

Group: de.julielab Artifact: jcore-lingscope-ae
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Artifact jcore-lingscope-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-archetype-ae
License BSD-2-Clause
Dependencies amount 8
Dependencies julielab-java-utilities, commons-lang3, logback-classic, jcore-types, abner-1.5, jcore-descriptor-creator, junit-jupiter-engine, assertj-core,
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biomedicus from group edu.umn.biomedicus (version 2.1.0)

The BioMedical Information Collection and Understanding System (BioMedICUS) is a system for large-scale text analysis and processing of biomedical and clinical reports.

Group: edu.umn.biomedicus Artifact: biomedicus
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Artifact biomedicus
Group edu.umn.biomedicus
Version 2.1.0
Last update 04. January 2019
Organization not specified
URL https://nlpie.github.io/biomedicus
License not specified
Dependencies amount 0
Dependencies No dependencies
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jcore-acronym-ae from group de.julielab (version 2.6.1)

Arconym Tagger based on the SCHWARTZ & HEARST Algorithm: Ariel S. Schwartz and Marti A. Hearst: A Simple Algorithm For Identifying Abbreviation Definitions in Biomedical Text. In: Pacific Symposium on Biocomputing, 2003.

Group: de.julielab Artifact: jcore-acronym-ae
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Artifact jcore-acronym-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 4
Dependencies slf4j-api, jcore-types, jcore-utilities, junit-jupiter-engine,
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jcore-jtbd-ae-biomedical-english from group de.julielab (version 2.6.0)

UIMA Wrapper for the JCoRe Token Boundary Detector with a model trained on a special biomedical corpus which consists of data from (manually annotated) material which we took from MedLine abstracts and a modified version of PennBioIE's underlying tokenization.

Group: de.julielab Artifact: jcore-jtbd-ae-biomedical-english
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Artifact jcore-jtbd-ae-biomedical-english
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-jtbd-ae-biomedical-english
License BSD-2-Clause
Dependencies amount 2
Dependencies jcore-jtbd-ae, junit-jupiter-engine,
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biomedicus-measures from group edu.umn.biomedicus (version 2.0.2)

A lightweight (small and dependency-free) Java 8 library for identifying and normalizing numbers and measurements in text. This was developed as a stand-alone component of BioMedICUS, a biomedical and clinical NLP engine developed by the NLP-IE Group at the University of Minnesota Institute for Health Informatics.

Group: edu.umn.biomedicus Artifact: biomedicus-measures
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Artifact biomedicus-measures
Group edu.umn.biomedicus
Version 2.0.2
Last update 04. January 2019
Organization not specified
URL https://github.com/nlpie/biomedicus-measures
License not specified
Dependencies amount 0
Dependencies No dependencies
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biomedicus-tokenizer from group edu.umn.biomedicus (version 0.0.3)

A lightweight (small and dependency-free) Java 8 library for Penn-like tokenization. This was developed as a stand-alone component of BioMedICUS, a biomedical and clinical NLP engine developed by the NLP-IE Group at the University of Minnesota Institute for Health Informatics.

Group: edu.umn.biomedicus Artifact: biomedicus-tokenizer
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Artifact biomedicus-tokenizer
Group edu.umn.biomedicus
Version 0.0.3
Last update 04. January 2019
Organization not specified
URL https://github.com/nlpie/biomedicus-tokenizer
License not specified
Dependencies amount 0
Dependencies No dependencies
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