Download JAR files tagged by bionlp with all dependencies
jcore-bionlpformat-reader from group de.julielab (version 2.6.1)
This reader generates CAS' from data that adheres to the BioNLP-ST format.
Group: de.julielab Artifact: jcore-bionlpformat-reader
Show all versions Show documentation Show source
Show all versions Show documentation Show source
0 downloads
Artifact jcore-bionlpformat-reader
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlpformat-reader
License BSD-2-Clause
Dependencies amount 5
Dependencies jcore-types, guava, slf4j-api, jcore-utilities, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlpformat-reader
License BSD-2-Clause
Dependencies amount 5
Dependencies jcore-types, guava, slf4j-api, jcore-utilities, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-bionlpformat-consumer from group de.julielab (version 2.6.1)
This consumer is used to generate BioNLP-ST (2009) compliant data from a CAS.
Group: de.julielab Artifact: jcore-bionlpformat-consumer
Show all versions Show documentation Show source
Show all versions Show documentation Show source
0 downloads
Artifact jcore-bionlpformat-consumer
Group de.julielab
Version 2.6.1
Last update 23. November 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlp09event-consumer
License BSD-2-Clause
Dependencies amount 4
Dependencies easymockclassextension, jcore-types, slf4j-api, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.1
Last update 23. November 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlp09event-consumer
License BSD-2-Clause
Dependencies amount 4
Dependencies easymockclassextension, jcore-types, slf4j-api, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-bionlp09event-reader from group de.julielab (version 2.2.0)
This reader generates CAS' from data that adheres to the BioNLP-ST (2009) format.
Group: de.julielab Artifact: jcore-bionlp09event-reader
Show all versions Show documentation Show source
Show all versions Show documentation Show source
0 downloads
Artifact jcore-bionlp09event-reader
Group de.julielab
Version 2.2.0
Last update 23. September 2016
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlp09event-reader
License not specified
Dependencies amount 5
Dependencies easymockclassextension, jcore-types, guava, slf4j-api, jcore-utilities,
There are maybe transitive dependencies!
Group de.julielab
Version 2.2.0
Last update 23. September 2016
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlp09event-reader
License not specified
Dependencies amount 5
Dependencies easymockclassextension, jcore-types, guava, slf4j-api, jcore-utilities,
There are maybe transitive dependencies!
jcore-bionlp09event-consumer from group de.julielab (version 2.2.0)
This consumer is used to generate BioNLP-ST (2009) compliant data from a CAS.
Group: de.julielab Artifact: jcore-bionlp09event-consumer
Show all versions Show documentation Show source
Show all versions Show documentation Show source
0 downloads
Artifact jcore-bionlp09event-consumer
Group de.julielab
Version 2.2.0
Last update 23. September 2016
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlp09event-consumer
License not specified
Dependencies amount 3
Dependencies easymockclassextension, jcore-types, slf4j-api,
There are maybe transitive dependencies!
Group de.julielab
Version 2.2.0
Last update 23. September 2016
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlp09event-consumer
License not specified
Dependencies amount 3
Dependencies easymockclassextension, jcore-types, slf4j-api,
There are maybe transitive dependencies!
jcore-biosem-ae-bionlp-st13 from group de.julielab (version 2.6.0)
This project employs the JCoRe BioSem wrapper (jcore-biosem-ae) with a BioSem database trained on the
BioNLP SharedTask 2013 train and development (mix) data for biological event extraction.
Artifact jcore-biosem-ae-bionlp-st13
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization not specified
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-biosem-ae-bionlp-st13
License BSD-2-Clause
Dependencies amount 4
Dependencies junit-jupiter-engine, jcore-biosem-ae, jcore-types, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization not specified
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-biosem-ae-bionlp-st13
License BSD-2-Clause
Dependencies amount 4
Dependencies junit-jupiter-engine, jcore-biosem-ae, jcore-types, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-biosem-ae-bionlp-st09 from group de.julielab (version 2.6.0)
This project employs the JCoRe BioSem wrapper (jcore-biosem-ae) with a BioSem database trained on the
BioNLP SharedTask 2009 train data for biological event extraction.
Artifact jcore-biosem-ae-bionlp-st09
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization not specified
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-biosem-ae-bionlp-st09
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-biosem-ae, junit-jupiter-engine, jcore-types,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization not specified
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-biosem-ae-bionlp-st09
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-biosem-ae, junit-jupiter-engine, jcore-types,
There are maybe transitive dependencies!
jcore-biosem-ae-bionlp-st11 from group de.julielab (version 2.6.0)
This project employs the JCoRe BioSem wrapper (jcore-biosem-ae) with a BioSem database trained on the
BioNLP SharedTask 2011 train and development (that is, "mixed") data for biological event extraction.
Artifact jcore-biosem-ae-bionlp-st11
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization not specified
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-biosem-ae-bionlp-st11
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-biosem-ae, junit-jupiter-engine, jcore-types,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization not specified
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-biosem-ae-bionlp-st11
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-biosem-ae, junit-jupiter-engine, jcore-types,
There are maybe transitive dependencies!
biosem-event-extractor from group de.julielab (version 1.2.0)
The event extraction engine used by the Amsterdam team in the BioNLP Shared Task 2011 challenge. The
code was adapted to also work with all data of the ST2013 challenge (there are 4 more trigger/event types in
these data in comparison with the ST2011), evaluation results stayed the same.
3 downloads
Artifact biosem-event-extractor
Group de.julielab
Version 1.2.0
Last update 04. January 2024
Organization not specified
URL http://www.ncbi.nlm.nih.gov/pubmed/22859502
License GNU Affero General Public License, Version 3.0
Dependencies amount 5
Dependencies hsqldb, jwnl, opennlp-tools, slf4j-api, aliasi-lingpipe,
There are maybe transitive dependencies!
Group de.julielab
Version 1.2.0
Last update 04. January 2024
Organization not specified
URL http://www.ncbi.nlm.nih.gov/pubmed/22859502
License GNU Affero General Public License, Version 3.0
Dependencies amount 5
Dependencies hsqldb, jwnl, opennlp-tools, slf4j-api, aliasi-lingpipe,
There are maybe transitive dependencies!
jcore-bionlpgold-pred-gene-merge-ae from group de.julielab (version 2.6.0)
Given the gold BioNLP ST gene mentions and other gene mentions - possibly from gene recognizer - merges the two different sources of genes. For simplicity, this component employs two different types to represent genes. The BioNLP ST reader uses the de.julielab.jcore.types.Gene type. The other genes should be realized with de.julielab.jcore.types.Protein annotations.
0 downloads
Artifact jcore-bionlpgold-pred-gene-merge-ae
Group de.julielab
Version 2.6.0
Last update 25. November 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlpgold-pred-gene-merge-ae
License BSD 2-Clause
Dependencies amount 5
Dependencies jcore-utilities, slf4j-api, jcore-types, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.0
Last update 25. November 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlpgold-pred-gene-merge-ae
License BSD 2-Clause
Dependencies amount 5
Dependencies jcore-utilities, slf4j-api, jcore-types, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!
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