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sirix-core from group com.github.johanneslichtenberger.sirix (version 0.1.0)

Sirix is a versioned, treebased storage system. It provides an ID-less diff-algorithm to import differences between two versions. Furthermore an ID-based diff-algorithm facilitates the comparison of versions stored within Sirix. A GUI with several visualizations for comparing these versions visually is available to aid an analyst. Versions are stored using well known versioning strategies (full, incremental, differential). The architecture is especially well suited for flash-disks because of a COW-principle. In the future we aim to provide throughout security as well as a replaced page-structure to speedup our architecture. A brackit(.org) binding will enable XQuery and the XQuery Update Facility. Temporal XPath axis and possibly diff-functions will help analysts to gain quick knowledge from the stored data.

Group: com.github.johanneslichtenberger.sirix Artifact: sirix-core
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Artifact sirix-core
Group com.github.johanneslichtenberger.sirix
Version 0.1.0
Last update 27. September 2012
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies snappy-java,
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sirix-parent from group com.github.johanneslichtenberger.sirix (version 0.1.1)

Sirix is a versioned, treebased storage system. It provides an ID-less diff-algorithm to import differences between two versions (currently XML-documents). Furthermore an ID-based diff-algorithm facilitates the comparison of versions stored within Sirix. A GUI with several visualizations for comparing these versions visually is available to aid an analyst. Versions are stored using well known versioning strategies (full, incremental, differential). The architecture is especially well suited for flash-disks because of a COW-principle. In the future we aim to provide throughout security as well as a replaced page-structure to speedup our architecture. A brackit(.org) binding will enable XQuery and the XQuery Update Facility. Temporal XPath axis and possibly diff-functions will help analysts to gain quick knowledge from the stored data.

Group: com.github.johanneslichtenberger.sirix Artifact: sirix-parent
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Artifact sirix-parent
Group com.github.johanneslichtenberger.sirix
Version 0.1.1
Last update 27. September 2012
Organization not specified
URL https://github.com/JohannesLichtenberger/sirix
License New BSD
Dependencies amount 9
Dependencies je, aspectjrt, slf4j-api, perfidix, xmlunit, logback-classic, guice, gson, guava,
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msdk-db-mona from group io.github.msdk (version 0.0.27)

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

Group: io.github.msdk Artifact: msdk-db-mona
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Artifact msdk-db-mona
Group io.github.msdk
Version 0.0.27
Last update 28. July 2019
Organization not specified
URL Not specified
License not specified
Dependencies amount 5
Dependencies msdk-datamodel, minimal-json, commons-lang, jersey-media-json-jackson, jersey-client,
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msdk-mona from group io.github.msdk (version 0.0.1)

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

Group: io.github.msdk Artifact: msdk-mona
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Artifact msdk-mona
Group io.github.msdk
Version 0.0.1
Last update 24. November 2015
Organization not specified
URL Not specified
License not specified
Dependencies amount 5
Dependencies msdk-datamodel, minimal-json, commons-lang, jersey-media-json-jackson, jersey-client,
There are maybe transitive dependencies!

minitest from group rubygems (version 5.4.1)

minitest provides a complete suite of testing facilities supporting TDD, BDD, mocking, and benchmarking. "I had a class with Jim Weirich on testing last week and we were allowed to choose our testing frameworks. Kirk Haines and I were paired up and we cracked open the code for a few test frameworks... I MUST say that minitest is *very* readable / understandable compared to the 'other two' options we looked at. Nicely done and thank you for helping us keep our mental sanity." -- Wayne E. Seguin minitest/unit is a small and incredibly fast unit testing framework. It provides a rich set of assertions to make your tests clean and readable. minitest/spec is a functionally complete spec engine. It hooks onto minitest/unit and seamlessly bridges test assertions over to spec expectations. minitest/benchmark is an awesome way to assert the performance of your algorithms in a repeatable manner. Now you can assert that your newb co-worker doesn't replace your linear algorithm with an exponential one! minitest/mock by Steven Baker, is a beautifully tiny mock (and stub) object framework. minitest/pride shows pride in testing and adds coloring to your test output. I guess it is an example of how to write IO pipes too. :P minitest/unit is meant to have a clean implementation for language implementors that need a minimal set of methods to bootstrap a working test suite. For example, there is no magic involved for test-case discovery. "Again, I can't praise enough the idea of a testing/specing framework that I can actually read in full in one sitting!" -- Piotr Szotkowski Comparing to rspec: rspec is a testing DSL. minitest is ruby. -- Adam Hawkins, "Bow Before MiniTest" minitest doesn't reinvent anything that ruby already provides, like: classes, modules, inheritance, methods. This means you only have to learn ruby to use minitest and all of your regular OO practices like extract-method refactorings still apply.

Group: rubygems Artifact: minitest
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Artifact minitest
Group rubygems
Version 5.4.1
Last update 28. March 2015
Organization not specified
URL https://github.com/seattlerb/minitest
License MIT
Dependencies amount 0
Dependencies No dependencies
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