Download JAR files tagged by compounds with all dependencies

A chemistry tagger which can identify simply elements, compounds, and ions

A library to extract blood compounds and their concentrations from blood analysis documents (physical documents, scanned PDFs, digitally created PDFs and images).

A library to extract blood compounds and their concentrations from blood analysis documents (physical documents, scanned PDFs, digitally created PDFs and images).

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

DICTIONARY-BASED COMPOUND SPLITTER FOR GERMAN BananaSplit is a compound splitter for German that uses a dictionary resource. The dictionary can be either a simple word list, or a word list equipped with POS values, or an XML based dictionary. The original version was able to use GermaNet as a dictionary. This is useful in applications that rely on GermaNet anyway: no additional lexicon needs to be generated and held in memory. This was also the original purpose of BananaSplit. It served as a compound splitter for a tool called BananaRelation. BananaRelation cannot be published here as it makes heavy use of unpublished code by EML Research, Heidelberg. BananaSplit can either be used as a standalone application or it can be integrated into other Java programs (as a library). This program emerged from the seminar Lexical Semantic Processing in NLP (winter term 2005/2006) taught by Iryna Gurevych at the Seminar für Sprachwissenschaft, Tübingen. Both BananaSplit and BananaRelation were introduced to the seminar participants on 17th of December, 2005. The key algorithm for compound splitting is based on Langer (1998). The program came to use in Müller and Gurevych (2006). Please note that the program splits compounds into two parts only. Details are given in the documents linked below.