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The Systems Biology Simulation Core Library provides an efficient and exhaustive Java™ implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project. It can be used on every operating system for which a Java Virtual Machine is available. Version 2.0 and beyond support simulation in three frameworks: constraint-based analysis, stochastic simulation, and ordinary differential equation systems. SBSCL supports SED-ML and COMBINE archives in OMEX format.

The RestFixture is a FitNesse (http://fitnesse.org) fixture that allows developers and/or product owners to write test fixtures for REST services with simplicity in mind. The idea is to write tests that are self documenting and easy to write and read, without the need to write Java code. The fixture allows test writers to express tests as actions (any of the allowed HTTP methods) to operate on resource URIs and express expectations on the content of the return code, headers and body. All without writing one single line of Java code. And it also works as a living/executable documentation of the API.

We propose two efficient algorithms for exploring topic diversity in large document corpora such as user generated content on the social web, bibliographic data, or other web repositories. Analyzing diversity is useful for obtaining insights into knowledge evolution, trends, periodicities, and topic heterogeneity of such collections. Calculating diversity statistics requires averaging over the similarity of all object pairs, which, for large corpora, is prohibitive from a computational point of view. Our proposed algorithms overcome the quadratic complexity of the average pair-wise similarity computation, and allow for constant time (depending on dataset properties) or linear time approximation with probabilistic guarantees.