Download JAR files tagged by differential with all dependencies

The Systems Biology Simulation Core Library provides an efficient and exhaustive Java™ implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project. It can be used on every operating system for which a Java Virtual Machine is available. Version 2.0 and beyond support simulation in three frameworks: constraint-based analysis, stochastic simulation, and ordinary differential equation systems. SBSCL supports SED-ML and COMBINE archives in OMEX format.

Sirix is a versioned, treebased storage system. It provides an ID-less diff-algorithm to import differences between two versions. Furthermore an ID-based diff-algorithm facilitates the comparison of versions stored within Sirix. A GUI with several visualizations for comparing these versions visually is available to aid an analyst. Versions are stored using well known versioning strategies (full, incremental, differential). The architecture is especially well suited for flash-disks because of a COW-principle. In the future we aim to provide throughout security as well as a replaced page-structure to speedup our architecture. A brackit(.org) binding will enable XQuery and the XQuery Update Facility. Temporal XPath axis and possibly diff-functions will help analysts to gain quick knowledge from the stored data.