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MASON is a fast discrete-event multiagent simulation library core in Java, designed to be the foundation for large custom-purpose Java simulations, and also to provide more than enough functionality for many lightweight simulation needs. MASON contains both a model library and an optional suite of visualization tools in 2D and 3D.

JTransforms is the first, open source, multithreaded FFT library written in pure Java. Currently, four types of transforms are available: Discrete Fourier Transform (DFT), Discrete Cosine Transform (DCT), Discrete Sine Transform (DST) and Discrete Hartley Transform (DHT). The code is derived from General Purpose FFT Package written by Takuya Ooura and from Java FFTPack written by Baoshe Zhang. This version has been modified to daemonize threads and stop any application using the library waiting after execution has finished, and is based on revision 29 of the svn version of the code from 2014-05-18.

This module contains the sequence datastructure of the TCS Alignment Toolbox. It defines the possible value sets in the ValueType enum as well as the different KeywordSpecification classes, namely: 1.) StringKeywordSpecification for string type values. 2.) SymbolicKeywordSpecification for values from a discrete alphabet (also refer to the Alphabet class) 3.) VectorialKeywordSpecification for vectors of some length (or for scalars) A NodeSpecification is a vector of such KeywordSpecifications and defines the order of value sets. A node, then, is defined as a vector of values from these value sets (also refer to the Value interface as well as the StringValue, SymbolicValue and VectorialValue classes). Finally a sequence is defined as a list of such nodes.

The Brown-UMBC Reinforcement Learning and Planning (BURLAP) Java code library is for the use and development of single or multi-agent planning and learning algorithms and domains to accompany them. The library uses a highly flexible state/observation representation where you define states with your own Java classes, enabling support for domains that discrete, continuous, relational, or anything else. Planning and learning algorithms range from classic forward search planning to value-function-based stochastic planning and learning algorithms.

RBFNetwork implements a normalized Gaussian radial basisbasis function network. It uses the k-means clustering algorithm to provide the basis functions and learns either a logistic regression (discrete class problems) or linear regression (numeric class problems) on top of that. Symmetric multivariate Gaussians are fit to the data from each cluster. If the class is nominal it uses the given number of clusters per class. RBFRegressor implements radial basis function networks for regression, trained in a fully supervised manner using WEKA's Optimization class by minimizing squared error with the BFGS method. It is possible to use conjugate gradient descent rather than BFGS updates, which is faster for cases with many parameters, and to use normalized basis functions instead of unnormalized ones.

SSJ is a Java library for stochastic simulation, developed under the direction of Pierre L'Ecuyer, in the Département d'Informatique et de Recherche Opérationnelle (DIRO), at the Université de Montréal. It provides facilities for generating uniform and nonuniform random variates, computing different measures related to probability distributions, performing goodness-of-fit tests, applying quasi-Monte Carlo methods, collecting (elementary) statistics, and programming discrete-event simulations with both events and processes.