Download JAR files tagged by employs with all dependencies

This extension for Aether contains a synchronization context that employs OS-level file locks to enable safe concurrent access to the local repository across processes.

This extension for Aether contains a synchronization context that employs OS-level file locks to enable safe concurrent access to the local repository across processes.

This extension for Aether contains a synchronization context that employs OS-level file locks to enable safe concurrent access to the local repository across processes.

This extension for Aether contains a synchronization context that employs OS-level file locks to enable safe concurrent access to the local repository across processes.

A Collection Reader that employs the JCoRe XML mapper to read XML documents. A mapping file must be delivered to determine which XML file elements have to be converted to which CAS annotation types and features. This is the base component for the JCoRe PubMed and Medline readers.

Leveraging the JCoRe XML Reader, this project employs a PubMed-enabled mapping file to map PubMed XML documents to CAS instances. The input is a directory of single XML files, each containing exactly one XML PubmedArticle. The XML format is the one used by NCBI when displaying results in PubMed as XML.

Given the gold BioNLP ST gene mentions and other gene mentions - possibly from gene recognizer - merges the two different sources of genes. For simplicity, this component employs two different types to represent genes. The BioNLP ST reader uses the de.julielab.jcore.types.Gene type. The other genes should be realized with de.julielab.jcore.types.Protein annotations.

Leveraging the JCoRe XML Reader, this project employs a Medline-enabled mapping file to map Medline XML documents to CAS instances. The input is a directory of single XML files, each containing exactly one XML MedlineCitation. The XML format is the one used by NCBI when downloading Medline documents in large batches from the NCBI FTP server. However, the component currently expects single documents instead of whole MedlineCitationSets containing sets of MedlineCitations.

Zay-ES (pronounced 'zay us' like Dr. Zaius) is a light weight flexible Entity Component System. Entity Component Systems use a data-oriented design approach that employs composition to build complex applications of systems. Systems are application code the operates on only a subset of the data components of an entity. Zay-ES is a data management library that facilitates these designs. It supports real-time in-memory entity components as well as persistent components, even at the same time.

The Shell Card Management API is REST-based and employs OAUTH 2.0,Basic and ApiKey authentication. The API endpoints accept JSON-encoded request bodies, return JSON-encoded responses and use standard HTTP response codes. All resources are located in the Shell Card Platform. The Shell Card Platform is the overall platform that encompasses all the internal Shell systems used to manage resources. The internal workings of the platform are not important when interacting with the API. However, it is worth noting that the platform uses a microservice architecture to communicate with various backend systems and some API calls are processed asynchronously. All endpoints use the POST verb for retrieving, updating, creating and deleting resources in the Shell Card Platform. The endpoints that retrieve resources from the Shell Card Platform allow flexible search parameters in the API request body.