Download JAR files tagged by file with all dependencies

In order to get around the JBI Lifecycle Classpath limitation in the application server, a new JBI jar file is being created called esb_jbi_framework.jar. This jar file will contain a MANIFEST.MF file that contains Class-Path: entries that point towards the jbi_rt.jar (JBI Runtime) and jbi_tests.jar (Scaffolding Registry et al) . This way we dont have to combine the throwaway jbi_tests.jar with the main jbi_rt.jar later. We would simply have to dereference it from jbi_framework.jar. Likewise adding a new JAR to the same classpath would simply mean adding a new entry to the ClassPath: header field.

SEWOL provides support for the handling of workflow traces. Specifically it allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. SEWOL also allows to write these traces on disk as a log file with the help of a special file writer for process logs. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). All types of models can be conveniently edited with the help of appropriate dialogs.

Package for loading a directory containing MRI data in NIfTI format. The directory to be loaded must contain as many subdirectories as there are classes of MRI data. Each subdirectory name will be used as the class label for the corresponding .nii files in that subdirectory. (This is the same strategy as the one used by WEKA's TextDirectoryLoader.) Currently, the package only reads volume information for the first time slot from each .nii file. The readDoubleVol(short ttt) method from the Nifti1Dataset class (http://niftilib.sourceforge.net/java_api_html/Nifti1Dataset.html) is used to read the data for each volume into a sparse WEKA instance (with ttt=0). For an LxMxN volume (the dimensions must be the same for each .nii file in the directory!), the order of values in the generated instance is [(z_1, y_1, x_1), ..., (z_1, y_1, x_L), (z_1, y_2, x_1), ..., (z_1, y_M, x_L), (z_2, y_1, x_1), ..., (z_N, y_M, x_L)]. If the volume is an image, then only x and y coordinates are used.

eFaps is a framework used to map objects with or without attached files to a relational database and optional file systems (only for attaches files). Configurable access control can be provided down to object and attribute level depending on implementation and use case. Depending on requirements, events (like triggers) allow to implement business logic and to separate business logic from user interface. The framework includes integrations (e.g. webdav, full text search) and a web application as 'simple' configurable user interface. Some best practises, example web application modules (e.g. team work module) support administrators and implementers using this framework.

In some data processing tasks we need to use huge maps or sets that are bigger than available JVM heap space or they are loading too slow to standard Java or Scala Maps. We use TSV format (text file with tab separated columns) for persist this kind of Maps or Sets. Some columns are used as a key and rest of columns as a value. Idea of this library is simple. We can prepare these maps once (sort by key), store it to file and then use it as memory mapped file. Searching key in sorted file has log(n) complexity. If more processes uses the same memory mapped file, it exists in memory just once (on Linux). This file can be loaded lazy by OS.

GWTUpload is a library for uploading files to web servers, showing a progress bar with real information about the process (file size, bytes transferred, etc). It uses ajax requests to ask the web server for the upload progress. It has two components written in java, the server side with servlet and utility classes, and the client side that is compiled into javascript using gwt. GWTUpload-gae is a library with aditional classes needed for using GwtUpload in Google Application Engine (GAE). JSUpload is the client library but compiled and exported into javascript, so users without Gwt skills can use it directly in their web pages. It includes a bunch of useful examples to learn how to use the library and see its features.

Rserve is a TCP/IP server which allows other programs to use facilities of R (see www.r-project.org) from various languages without the need to initialize R or link against R library. Every connection has a separate workspace and working directory. Client-side implementations are available for popular languages such as C/C++, PHP and Java. Rserve supports remote connection, authentication and file transfer. Typical use is to integrate R backend for computation of statstical models, plots etc. in other applications.

ECJ, A Java-based Evolutionary Computation Research System. ECJ is a research EC system written in Java. It was designed to be highly flexible, with nearly all classes (and all of their settings) dynamically determined at runtime by a user-provided parameter file. All structures in the system are arranged to be easily modifiable. Even so, the system was designed with an eye toward efficiency. ECJ is developed at George Mason University's ECLab Evolutionary Computation Laboratory. The software has nothing to do with its initials' namesake, Evolutionary Computation Journal. ECJ's sister project is MASON, a multi-agent simulation system which dovetails with ECJ nicely.