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algorithms from group de.cit-ec.tcs.alignment (version 3.1.1)
This module defines the interface for AlignmentAlgorithms as well as some helper classes. An
AlignmentAlgorithm computes an Alignment of two given input sequences, given a Comparator that
works in these sequences.
More details on the AlignmentAlgorithm can be found in the respective interface. More information
on Comparators can be found in the comparators module.
The resulting 'Alignment' may be just a real-valued dissimilarity between the input sequence or
may incorporate additional information, such as a full Alignment, a PathList, a PathMap or a
CooptimalModel. If those results support the calculation of a Gradient, they implement the
DerivableAlignmentDistance interface.
In more detail, the Alignment class represents the result of a backtracing scheme, listing all
Operations that have been applied in one co-optimal Alignment.
A classic AlignmentAlgorithm does not result in a differentiable dissimilarity, because the
minimum function is not differentiable. Therefore, this package also contains utility functions
for a soft approximation of the minimum function, namely Softmin.
For faster (parallel) computation of many different alignments or gradients we also provide the
ParallelProcessingEngine, the SquareParallelProcessingEngine and the ParallelGradientEngine.
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Artifact algorithms
Group de.cit-ec.tcs.alignment
Version 3.1.1
Last update 26. October 2018
Organization not specified
URL http://openresearch.cit-ec.de/projects/tcs
License The GNU Affero General Public License, Version 3
Dependencies amount 3
Dependencies comparators, parallel, lombok,
There are maybe transitive dependencies!
Group de.cit-ec.tcs.alignment
Version 3.1.1
Last update 26. October 2018
Organization not specified
URL http://openresearch.cit-ec.de/projects/tcs
License The GNU Affero General Public License, Version 3
Dependencies amount 3
Dependencies comparators, parallel, lombok,
There are maybe transitive dependencies!
comparators from group de.cit-ec.tcs.alignment (version 3.1.1)
This module defines the interfaces for Comparators in the TCS Alignment Toolbox. A Comparator has
the purpose of defining the dissimilarity between elements in the input sequences of an
Alignment. More specific information on Comparators can be found in the 'Comparator' interface.
You can find a lot of helpful standard implementations of Comparators in the comparators-lib
module.
In the TCS Alignment Toolbox we require the output values of Comparators to lie in the range
[0,1]. Many natural dissimilarities on value sets do not meet this criterion, such that
additional normalization has to be applied. To that end this package also contains a Normalizer
interface for functions that map real values from the range [0, infinity) to the range [0,1].
This package also provides a few convenience implementations of the Comparator interface to make
the implementation of custom Comparators simpler, namely: SkipExtendedComparator,
ParameterLessSkipExtendedComparator, ComparisonBasedSkipExtendedComparator, and
ParameterLessComparisonBasedSkipExtendedComparator.
Finally the TCS Alignment Toolbox also provides the means to learn parameters of Comparators. To
enable that Comparators must implement the DerivableComparator interface to properly define the
parameters that can be learned and the gradient of the dissimilarity with respect to these
parameters. Gradients are stored using the Gradient interface as well as some convenience
implementations of said interface, namely EmptyGradient, SingletonGradient, ArrayGradient and
ListGradient.
Group: de.cit-ec.tcs.alignment Artifact: comparators
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Artifact comparators
Group de.cit-ec.tcs.alignment
Version 3.1.1
Last update 26. October 2018
Organization not specified
URL http://openresearch.cit-ec.de/projects/tcs
License The GNU Affero General Public License, Version 3
Dependencies amount 1
Dependencies lombok,
There are maybe transitive dependencies!
Group de.cit-ec.tcs.alignment
Version 3.1.1
Last update 26. October 2018
Organization not specified
URL http://openresearch.cit-ec.de/projects/tcs
License The GNU Affero General Public License, Version 3
Dependencies amount 1
Dependencies lombok,
There are maybe transitive dependencies!
rush from group edu.utah.bmi.nlp (version 3.0)
RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is
specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table
to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and
eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool
Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found at:
https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2495498-1.3363244/2495498-1.3363247?timeStamp=1479743941616
This version allows defining section scopes for sentence segmentation.
Artifact rush
Group edu.utah.bmi.nlp
Version 3.0
Last update 10. February 2018
Organization The Department of Biomedical Informatics, University of Utah
URL https://github.com/jianlins/RuSH
License The Apache Software License, Version 2
Dependencies amount 3
Dependencies nlp-core, fastner, junit-repeat-rule,
There are maybe transitive dependencies!
Group edu.utah.bmi.nlp
Version 3.0
Last update 10. February 2018
Organization The Department of Biomedical Informatics, University of Utah
URL https://github.com/jianlins/RuSH
License The Apache Software License, Version 2
Dependencies amount 3
Dependencies nlp-core, fastner, junit-repeat-rule,
There are maybe transitive dependencies!
rush from group edu.utah.bmi (version 1.0)
RuSH is an efficient, reliable, and easy adaptable rule-based sentence segmentation solution. It is
specifically designed to handle the telegraphic written text in clinical note. It leverages a nested hash table
to execute simultaneous rule processing, which reduces the impact of the rule-base growth on execution time and
eliminates the effect of rule order on accuracy.
If you wish to cite RuSH in a publication, please use:
Jianlin Shi ; Danielle Mowery ; Kristina M. Doing-Harris ; John F. Hurdle.RuSH: a Rule-based Segmentation Tool
Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text. AMIA Annu Symp Proc. 2016: 1587.
The full text can be found at:
https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2495498-1.3363244/2495498-1.3363247?timeStamp=1479743941616
Artifact rush
Group edu.utah.bmi
Version 1.0
Last update 23. April 2017
Organization The Department of Biomedical Informatics, University of Utah
URL https://github.com/jianlins/RuSH
License The Apache Software License, Version 2
Dependencies amount 6
Dependencies uimaj-core, uimaj-tools, uimaj-document-annotation, uimafit-core, uimaj-examples, junit,
There are maybe transitive dependencies!
Group edu.utah.bmi
Version 1.0
Last update 23. April 2017
Organization The Department of Biomedical Informatics, University of Utah
URL https://github.com/jianlins/RuSH
License The Apache Software License, Version 2
Dependencies amount 6
Dependencies uimaj-core, uimaj-tools, uimaj-document-annotation, uimafit-core, uimaj-examples, junit,
There are maybe transitive dependencies!
com.ibm.jbatch.tck.dist.exec from group com.ibm.jbatch.tck (version 1.1-b03)
Group: com.ibm.jbatch.tck Artifact: com.ibm.jbatch.tck.dist.exec
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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com.ibm.jbatch.tck.dist from group com.ibm.jbatch.tck (version 1.1-b03)
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Artifact com.ibm.jbatch.tck.dist
Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
Organization not specified
URL Not specified
License not specified
Dependencies amount 11
Dependencies junit, testng, javax.batch-api, com.ibm.jbatch.tck, com.ibm.jbatch.tck, com.ibm.jbatch.tck, com.ibm.jbatch.tck.spi, com.ibm.jbatch.tck.spi, com.ibm.jbatch.tck.spi, javax.inject, xmlunit,
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
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URL Not specified
License not specified
Dependencies amount 11
Dependencies junit, testng, javax.batch-api, com.ibm.jbatch.tck, com.ibm.jbatch.tck, com.ibm.jbatch.tck, com.ibm.jbatch.tck.spi, com.ibm.jbatch.tck.spi, com.ibm.jbatch.tck.spi, javax.inject, xmlunit,
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com.ibm.jbatch.tck.exec from group com.ibm.jbatch.tck (version 1.1-b03)
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
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URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
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com.ibm.jbatch.tck.cts from group com.ibm.jbatch.tck (version 1.1-b03)
Artifact com.ibm.jbatch.tck.cts
Group com.ibm.jbatch.tck
Version 1.1-b03
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URL Not specified
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Dependencies amount 2
Dependencies com.ibm.jbatch.tck, com.ibm.jbatch.tck.spi,
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
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URL Not specified
License not specified
Dependencies amount 2
Dependencies com.ibm.jbatch.tck, com.ibm.jbatch.tck.spi,
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com.ibm.jbatch.tck from group com.ibm.jbatch.tck (version 1.1-b03)
Group: com.ibm.jbatch.tck Artifact: com.ibm.jbatch.tck
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
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URL Not specified
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Dependencies amount 7
Dependencies junit, testng, javax.batch-api, com.ibm.jbatch.spi, com.ibm.jbatch.tck.spi, javax.inject, xmlunit,
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Group com.ibm.jbatch.tck
Version 1.1-b03
Last update 20. April 2016
Organization not specified
URL Not specified
License not specified
Dependencies amount 7
Dependencies junit, testng, javax.batch-api, com.ibm.jbatch.spi, com.ibm.jbatch.tck.spi, javax.inject, xmlunit,
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com.ibm.jbatch.tck.spi from group com.ibm.jbatch.tck (version 1.1-b03)
Group: com.ibm.jbatch.tck Artifact: com.ibm.jbatch.tck.spi
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Group com.ibm.jbatch.tck
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Dependencies amount 1
Dependencies javax.batch-api,
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Group com.ibm.jbatch.tck
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Last update 20. April 2016
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Dependencies amount 1
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