Download JAR files tagged by gene with all dependencies

julielab-concept-creation-ncbi-gene from group de.julielab (version 1.3.1)

This project uses internal JULIE Lab files to create database concepts for the NCBI Gene database.

Group: de.julielab Artifact: julielab-concept-creation-ncbi-gene
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Artifact julielab-concept-creation-ncbi-gene
Group de.julielab
Version 1.3.1
Last update 23. January 2023
Organization not specified
URL Not specified
License not specified
Dependencies amount 4
Dependencies julielab-concept-db-manager-core, guava, julielab-java-utilities, commons-io,
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jcore-banner-ae from group de.julielab (version 2.6.1)

Banner gene tagging tool. Bases on version 0.0.12-SNAPSHOT from scm:git:[email protected]:oaqa/banner.git.

Group: de.julielab Artifact: jcore-banner-ae
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Artifact jcore-banner-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization not specified
URL Not specified
License BSD-2-Clause
Dependencies amount 11
Dependencies commons-collections, commons-configuration, commons-lang, commons-logging, dragontool, jcore-types, jcore-utilities, jcore-mallet-2.0.9, jcore-descriptor-creator, julielab-java-utilities, junit-jupiter-engine,
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jcore-bc2gm-reader from group de.julielab (version 2.6.1)

This component allows to read gene annotations provided in the BioCreative II Gene Mention format.

Group: de.julielab Artifact: jcore-bc2gm-reader
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Artifact jcore-bc2gm-reader
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bc2gm-reader
License BSD-2-Clause
Dependencies amount 5
Dependencies jcore-descriptor-creator, guava, slf4j-api, jcore-descriptor-creator, jcore-types,
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jcore-banner-ae-biomedical-english from group de.julielab (version 2.6.0)

The JCoRe BANNER Gene Tagger wrapper with a model for biomedical english.

Group: de.julielab Artifact: jcore-banner-ae-biomedical-english
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Artifact jcore-banner-ae-biomedical-english
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 4
Dependencies slf4j-api, jcore-banner-ae, logback-classic, junit-jupiter-engine,
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julielab-gene-mapper from group de.julielab (version 2.5.0)

Group: de.julielab Artifact: julielab-gene-mapper

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Artifact julielab-gene-mapper
Group de.julielab
Version 2.5.0

gene-candidate-retrieval from group de.julielab (version 2.5.0)

Group: de.julielab Artifact: gene-candidate-retrieval
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Artifact gene-candidate-retrieval
Group de.julielab
Version 2.5.0
Last update 03. December 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 3
Dependencies gene-mapper-experimental-base, lucene-analyzers-common, lucene-suggest,
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gene-name-mapping from group de.julielab (version 1.0.1)

Group: de.julielab Artifact: gene-name-mapping

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Artifact gene-name-mapping
Group de.julielab
Version 1.0.1

molgenis-gavin from group org.molgenis (version 6.1.0)

Plugin module for Gene-Aware Variant INterpretation for medical sequencing.

Group: org.molgenis Artifact: molgenis-gavin
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Artifact molgenis-gavin
Group org.molgenis
Version 6.1.0
Last update 28. May 2018
Organization not specified
URL Not specified
License not specified
Dependencies amount 7
Dependencies molgenis-data, molgenis-data-file, molgenis-core-ui, molgenis-data-annotators, molgenis-jobs, jcl-over-slf4j, spring-context-support,
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jcore-bc2gmformat-writer from group de.julielab (version 2.6.1)

This component allows to write CAS entity annotations into the format used for the BioCreative II Gene Mention challenge.

Group: de.julielab Artifact: jcore-bc2gmformat-writer
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Artifact jcore-bc2gmformat-writer
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bc2gmformat-writer
License BSD-2-Clause
Dependencies amount 6
Dependencies slf4j-api, jcore-types, junit-jupiter-engine, jcore-utilities, julielab-java-utilities, jcore-descriptor-creator,
There are maybe transitive dependencies!

gene-mapper-resources from group de.julielab (version 2.5.0)

This project assembles code and files required to build the dictionaries and indexes used by the JCoRe Gene Mapper.

Group: de.julielab Artifact: gene-mapper-resources
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Artifact gene-mapper-resources
Group de.julielab
Version 2.5.0
Last update 03. December 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 16
Dependencies gene-id-mapper, slf4j-api, jcore-types, piccolo, logback-classic, julie-xml-tools, costosys, junit-jupiter-engine, julielab-java-utilities, junit-jupiter-engine, jcore-xmi-db-reader, jcore-db-checkpoint-ae, jcore-xmi-splitter, jcore-descriptor-creator, assertj-core, commons-compress,
There are maybe transitive dependencies!

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