Download JAR files tagged by gold with all dependencies

JUnit Rule for gold-copy testing

Gold Data Spider for fetching pages and extracting data.

Java implementation of Devin Cook's GOLD Parser engine

Exchange rates and gold quotations NBP (Narodowy Bank Polski) API for Java

GATE plugin that provides processing resources for evaluating annotations against a gold standard and calculate statistics like precision, recall or F-measure.

Midas is a gold file testing utility, or approval testing, used to match test results with a previous result.

Given the gold BioNLP ST gene mentions and other gene mentions - possibly from gene recognizer - merges the two different sources of genes. For simplicity, this component employs two different types to represent genes. The BioNLP ST reader uses the de.julielab.jcore.types.Gene type. The other genes should be realized with de.julielab.jcore.types.Protein annotations.

This project has a lot of business classes to work with genes and related named entities. Genes are part of a GeneDocument and may have gold IDs as well as mapped/predicted IDs. Another large part are species because most (all?) gene ID databases are species specific. So there are also classes or members to represent species mentions and the assignment of species IDs (taxonomy IDs) to genes. There is little to no business logic herein. This project is only useful as building block in other projects dealing with species assignment, gene ID mapping or similar efforts.