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This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.

Contructs Hidden Naive Bayes classification model with high classification accuracy and AUC. For more information refer to: H. Zhang, L. Jiang, J. Su: Hidden Naive Bayes. In: Twentieth National Conference on Artificial Intelligence, 919-924, 2005.

This package contains the service implementations of the core services. All classes in this package are hidden in internal and should not be directly used. It is very likely that this package is split into the various sub-packages in future releases.

http://www.mhsatman.com

DirBuster is a multi threaded java application designed to brute force directories and files names on web/application servers. Often is the case now of what looks like a web server in a state of default installation is actually not, and has pages and applications hidden within. DirBuster attempts to find these.

The WicketStuff Multi-Text input is a Javascript widget which mimics the To: input in Apple's Mail.app, or the >fb:multi-friend-input< input from Facebook. Essentially, the user may type a piece of text into the input then hit the enter key to have the text added to the input in a rounded box. The user may delete the texted entered by either clicking on an x button within the rounded box, or hitting the backspace button to highlight the text, then clicking backspace again to delete it. Two sets of hidden inputs are used to keep track of the text added to the input and the text deleted.

The WicketStuff Multi-Text input is a Javascript widget which mimics the To: input in Apple's Mail.app, or the >fb:multi-friend-input< input from Facebook. Essentially, the user may type a piece of text into the input then hit the enter key to have the text added to the input in a rounded box. The user may delete the texted entered by either clicking on an x button within the rounded box, or hitting the backspace button to highlight the text, then clicking backspace again to delete it. Two sets of hidden inputs are used to keep track of the text added to the input and the text deleted.

Balea creates a proxy of javax.sql.DataSource, providing dynamic routing to multiple container based databases following a On Demand Data Source Access architecture. Docker is used as manager to create, start or stop database containers on demand and link correspondent data volumes. Thanks to this approach is possible to distribute data across multiple databases keeping active only the necessary ones in each moment maximizing the use of system resources. The distribution and management of data is hidden under the hood, any process that uses this data source interface (i.e. Hibernate) will perceive it as a single source of data. It makes possible for standard SQL database like Postgresql or MySQL to be maintained, backed up or versioned with simple file system operations as the data volumes are attached dynamically to the managed Docker containers. Docker integration allows also to manage database containers in remote hosts.

GroupDocs.Metadata for Java is a class library to process metadata associated with various Document, Image, CAD, Audio, Video and Archive formats. Key Features: - Covers most popular metadata standards: XMP, EXIF, IPTC, Image Resource Blocks, ID3, document properties - Covers most popular document formats: Microsoft Word, Microsoft Excel, Microsoft PowerPoint, PDF, Microsoft OneNote, Microsoft Visio, Open Document Format - Covers most popular image formats: BMP, GIF, DjVu, JPEG, PNG, TIFF, PSD, WebP, WMF, EMF, DICOM - Covers most popular email formats: Outlook Message, Email Message - Covers most popular audio formats: Mp3, WAV - Covers most popular video formats: Avi, Mov - Create, modify and remove metadata associated with supported document and image formats with a few lines of code - Manage EXIF metadata in Jpeg and TIFF formats - Manage XMP metadata in image and PDF formats - Manage Image Resource blocks in image formats - Manage audio metadata: ID3 tag (ID3v1, ID3v2), Lyrics3 tag, APE - Utilities to inspect and clean hidden metadata in document formats - Utilities to Search and Compare all metadata - Utilities to Export metadata to Excel/Csv - Metadata cleaner utility - MIME type detection - Read track changes. Accept or reject track changes - Read EXIF maker-notes: Sony, Nikon, Canon, Panasonic For more details on the library, please visit GroupDocs website at: https://products.groupdocs.com/metadata/Java Note: The library comes up with some limitations in the evaluation mode. In order to test full features of GroupDocs.Metadata for Java library, please request a free 30-day temporary license.

This package currently contains classes for training multilayer perceptrons with one hidden layer, where the number of hidden units is user specified. MLPClassifier can be used for classification problems and MLPRegressor is the corresponding class for numeric prediction tasks. The former has as many output units as there are classes, the latter only one output unit. Both minimise a penalised squared error with a quadratic penalty on the (non-bias) weights, i.e., they implement "weight decay", where this penalised error is averaged over all training instances. The size of the penalty can be determined by the user by modifying the "ridge" parameter to control overfitting. The sum of squared weights is multiplied by this parameter before added to the squared error. Both classes use BFGS optimisation by default to find parameters that correspond to a local minimum of the error function. but optionally conjugated gradient descent is available, which can be faster for problems with many parameters. Logistic functions are used as the activation functions for all units apart from the output unit in MLPRegressor, which employs the identity function. Input attributes are standardised to zero mean and unit variance. MLPRegressor also rescales the target attribute (i.e., "class") using standardisation. All network parameters are initialised with small normally distributed random values.