Download JAR files tagged by literature with all dependencies

Lemmatization tool for morphological analysis of biomedical literature downloaded from SourceForge

This is a collection of string transformers, all of which implement a “transform” method that takes a string and returns one. Some transformers are very generic, and others are aimed at botany, taxonomy or related literature.

The BioCommons library contains classes to work with 2D and 3D structural bioinformatics data. There are parsers for PDB and mmCIF files and many formats of 2D structure with classifications and notations used in the literature, as well as algorithms implementations.

The MEKA project provides an open source implementation of methods for multi-label classification and evaluation. It is based on the WEKA Machine Learning Toolkit. Several benchmark methods are also included, as well as the pruned sets and classifier chains methods, other methods from the scientific literature, and a wrapper to the MULAN framework.