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HermiT is reasoner for ontologies written using the Web Ontology Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much more. This is the maven build of HermiT and is designed for people who wish to use HermiT from within the OWL API. It is now versioned in the main HermiT version repository, although not officially supported by the HermiT developers. The version number of this package is a composite of the HermiT version and an value representing releases of this packaged version. So, 1.3.7.1 is the first release of the mavenized version of HermiT based on the 1.3.7 release of HermiT. This package includes the Jautomata library (http://jautomata.sourceforge.net/), and builds with it directly. This library appears to be no longer under active development, and so a "fork" seems appropriate. No development is intended or anticipated on this code base.

Jadex XML is an XML data binding framework for Java and also for other representations. The main idea of Jadex XML is that neither the XML-Schema on the one side nor the Java classes on the other side should define the binding. Instead, a separate mapping between both is used as a mediation. This allows designing the XML representation independent of the Java side but still being able to connect both as desired. This idea was first put forward by the JiBX data binding framework. Jadex XML pushes it further by combining it with the configuration by exception principle. The framework can detect obvious correspondences between both sides automatically and only needs configuration information when translations are necessary. The configuration information is currently specified directly in form of Java configuration classes.

This service implements the Indexer and Searcher interface of WebLab and connect to a remote SOLR engine in order to realize the functions. The connection is mandatory and thus the remote SOLR server should be started beforehand. Configuration of the SOLR server URL is found in src/main/webapp/WEB-INF/cxf-servlet.xml . See in particular "indexerServiceBean" and "searcherServiceBean". Moreover, the service implements several "Analyser" services that could be included in a complete search chain in order to: - enrich a ResultSet with metadata about Hits (see resultSetMetaEnricherServiceBean) - highlight snippet in ResultSet (see highlighterServiceBean) - provide facets related to the current results (see facetSuggestionServiceBean) - suggest spell correction of the original query (see spellSuggestionServiceBean)

This repository contains various third party sources required by the main retepTools repository. The reason for this is when they are only available in SNAPSHOT format and we require a release version to enable us to run a release. Although not ideal, this is sometimes necessary if some critical bug needs to be fixed. Currently this contains docbkx-tools. Rules for this repository: * Projects must follow the same licensing as the main project :- BSD, Apache2 etc but not GPL, LGPL etc * groupId's must be within the uk.org.retep.third-party namespace - and not the projects original namespace (so we don't have version conflicts) * Must be disabled/removed once those projects become stable

A tool to help visualise API differences between two different versions of a project. Jardiff takes two jar files and outputs all the public API changes as xml, html or plain text. Currently this is command line driven, though we are working on an ant plugin. It requires java 1.4 to run. <h2>Background</h2> At OSjava, we were using a shell script to work out API differences between our release versions. This unfortunately doesn't scale very well to larger projects, the main reason for jardiff was to do the same in a much shorter time (From memory it was taking minutes to get the API diff from two fairly small jars). In it's current state, jardiff can generate the api differences between rt.jar for java 1.4 and java 1.5 in under 20 seconds, so it should scale to even the largest of projects.

PATRIUS is a core space dynamics Java library that enables to quickly develop high level algorithms such as orbit extrapolator. PATRIUS contains several sub-libraries that work together and cover low level classes (i.e.: such as matrix, vectors, orbits parameters) as well as high level classes and interfaces (i.e.: numerical propagators, attitude laws, manoeuvers sequences). All the main domains of space dynamics are available: Analysis, algebra and geometry core library (quaternions, derivable functions, integrators …) Core objects for space dynamics (dates, orbits, frames...) Orbit propagation: analytical, semi-analytical and numerical propagators, a full set of force models Maneuvers: impulsive or continuous thrust, sequences Attitude: extensible set of attitude laws, sequences and guidance framework Events: event detection (orbital, sensor events, etc.) and post-processing (chronograms) Spacecraft: characteristics of mass, geometry (drag force), sensors field of view, etc.

HermiT is reasoner for ontologies written using the Web Ontology Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much more. This is the maven build of HermiT and is designed for people who wish to use HermiT from within the OWL API. It is now versioned in the main HermiT version repository, although not officially supported by the HermiT developers. The version number of this package is a composite of the HermiT version and a value representing the OWLAPI release it is compatible with. Note that the group id for the upstream HermiT is com.hermit-reasoner, while this fork is released under net.sourceforge.owlapi. This fork exists to allow HermiT users to use newer OWLAPI versions than the ones supported by the original HermiT codebase. This package includes the Jautomata library (http://jautomata.sourceforge.net/), and builds with it directly. This library appears to be no longer under active development, and so a "fork" seems appropriate. No development is intended or anticipated on this code base.

The boilerpipe library provides algorithms to detect and remove the surplus "clutter" (boilerplate, templates) around the main textual content of a web page. The library already provides specific strategies for common tasks (for example: news article extraction) and may also be easily extended for individual problem settings. Extracting content is very fast (milliseconds), just needs the input document (no global or site-level information required) and is usually quite accurate. Boilerpipe is a Java library written by Christian Kohlschütter. It is released under the Apache License 2.0. The algorithms used by the library are based on (and extending) some concepts of the paper "Boilerplate Detection using Shallow Text Features" by Christian Kohlschütter et al., presented at WSDM 2010 -- The Third ACM International Conference on Web Search and Data Mining New York City, NY USA.

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

Includes 2 main parts: - Path finding through 2D polygons using the A star algorithm and navigation-mesh generation Field of vision / shadows / line of sight / lighting. The basic polygon and point classes are the KPolygon and KPoint. KPolygon contains a list of KPoints for vertices as well as a center (centroid), area, and radius (circular bound or distance from center to furthest point). KPolygon was born out of the need for a more game-oriented and flexible polygon class than the Path2D class in the standard Java library. KPolygon implements java.awt.geom.Shape so it can be easily drawn and filled by Java2D's Graphics2D object. - This API provides path-finding and field-of-vision. For other complex geometric operations such as buffering (fattening and shrinking) and constructive area geometry (intersections and unions) it is recommended to use the excellent Java Topology Suite (JTS). The standard Java2D library also provides the Area class which can be used for some constructive area geometry operations. Note that there is a utility class PolygonConverter that can quickly convert KPolygons to JTS polygons and vice versa.