Download JAR files tagged by metadata with all dependencies

Maltcms, short for "Modular Application Toolkit for Chromatography Mass-Spectrometry" is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.

This library is a façade for image manipulation, acting as a proxy to libraries such as Java2D, JAI, ImageJ. In its early years (after 2003) it was used for photo development, metadata management and even demonstrated distributed calculus on the Sun Grid. At the end of 2016 development stopped. It resumed at the end of 2022, dropping obsolete stuff (JAI). At the moment the portions related to image manipulation are not tested. Features about metadata manipulation are being actively developed. A few scripts for U*ix and Windows systems are provided to quickly run examples: + runViewerExample.sh + runHistogramViewerExample.sh + runViewerExample.bat + runHistogramViewerExample.bat Directory tree ============== * modules/Core sources for the core component * modules/Metadata sources for the Metadata component * modules/Processor sources for the imaging processor * modules/Renderer sources for the renderer * modules/Examples/ViewerExample example about the renderer * modules/Examples/HistogramViewerExample example about histogram computation * modules/Examples/CustomOperationExample example about custom operations * modules/Examples/Miscellaneous miscellaneous examples