Download JAR files tagged by ncbi with all dependencies
ddi-bioproject-reader from group uk.ac.ebi.ddi.api.readers (version 1.9)
Retrireve all NCBI datasests
Group: uk.ac.ebi.ddi.api.readers Artifact: ddi-bioproject-reader
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Show all versions Show documentation Show source
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Artifact ddi-bioproject-reader
Group uk.ac.ebi.ddi.api.readers
Version 1.9
Last update 14. September 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 17
Dependencies spring-web, spring-test, spring-context-support, spring-retry, google-collections, slf4j-api, jcl-over-slf4j, logback-core, logback-classic, junit, jackson-databind, commons-io, jaxb-impl, jaxb-xjc, commons-lang3, ddi-api-readers, ddi-service-db,
There are maybe transitive dependencies!
Group uk.ac.ebi.ddi.api.readers
Version 1.9
Last update 14. September 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 17
Dependencies spring-web, spring-test, spring-context-support, spring-retry, google-collections, slf4j-api, jcl-over-slf4j, logback-core, logback-classic, junit, jackson-databind, commons-io, jaxb-impl, jaxb-xjc, commons-lang3, ddi-api-readers, ddi-service-db,
There are maybe transitive dependencies!
julielab-concept-creation-ncbi-gene from group de.julielab (version 1.3.1)
Group: de.julielab Artifact: julielab-concept-creation-ncbi-gene
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jcore-pubtator-reader from group de.julielab (version 2.6.1)
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jcore-biosem-ae from group de.julielab (version 2.6.2)
A UIMA wrapper around the BioSem Event Extractor from the University of Amsterdam.
http://www.ncbi.nlm.nih.gov/pubmed/22859502
0 downloads
Artifact jcore-biosem-ae
Group de.julielab
Version 2.6.2
Last update 04. January 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-biosem-ae
License BSD-2-Clause
Dependencies amount 4
Dependencies commons-lang3, biosem-event-extractor, jcore-types, junit,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.2
Last update 04. January 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-biosem-ae
License BSD-2-Clause
Dependencies amount 4
Dependencies commons-lang3, biosem-event-extractor, jcore-types, junit,
There are maybe transitive dependencies!
jcore-feature-value-replacement-ae from group de.julielab (version 2.6.1)
This analysis engine simply replaces feature values of feature structures with other values as defined by an external resource, e.g. file. For instance, all NCBI Gene IDs could be mapped to Ensemble IDs.
Group: de.julielab Artifact: jcore-feature-value-replacement-ae
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Artifact jcore-feature-value-replacement-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-feature-value-replacement-ae
License not specified
Dependencies amount 3
Dependencies jcore-utilities, jcore-descriptor-creator, junit,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-feature-value-replacement-ae
License not specified
Dependencies amount 3
Dependencies jcore-utilities, jcore-descriptor-creator, junit,
There are maybe transitive dependencies!
ner-import from group de.cit-ec.scie (version 2.0.1)
Tool used to import ontologies from various file formats
(native simple XML used for the small ontologies, NCBI MeSH,
NCBI Taxonomy) into the internal NER ontology database.
0 downloads
Artifact ner-import
Group de.cit-ec.scie
Version 2.0.1
Last update 10. December 2014
Organization not specified
URL http://openresearch.cit-ec.de/projects/scie/
License The GNU Affero General Public License, Version 3
Dependencies amount 2
Dependencies ner-core, ner-mapdb,
There are maybe transitive dependencies!
Group de.cit-ec.scie
Version 2.0.1
Last update 10. December 2014
Organization not specified
URL http://openresearch.cit-ec.de/projects/scie/
License The GNU Affero General Public License, Version 3
Dependencies amount 2
Dependencies ner-core, ner-mapdb,
There are maybe transitive dependencies!
fastcontext from group edu.utah.bmi.nlp (version 2.0.1.0-jdk11)
FastContext is an optimized Java implementation of ConText algorithm
(https://www.ncbi.nlm.nih.gov/pubmed/23920642). It runs two orders of magnitude faster than previous two
popular implementations: JavaConText and GeneralConText.
Version 2.0 includes UIMA wrapper
0 downloads
Artifact fastcontext
Group edu.utah.bmi.nlp
Version 2.0.1.0-jdk11
Last update 06. August 2024
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies nlp-core,
There are maybe transitive dependencies!
Group edu.utah.bmi.nlp
Version 2.0.1.0-jdk11
Last update 06. August 2024
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies nlp-core,
There are maybe transitive dependencies!
jcore-pubmed-reader from group de.julielab (version 2.6.0)
Leveraging the JCoRe XML Reader, this project employs a PubMed-enabled mapping file to map PubMed XML
documents to CAS instances. The input is a directory of single XML files, each containing exactly one XML
PubmedArticle. The XML format is the one used by NCBI when displaying results in PubMed as XML.
Artifact jcore-pubmed-reader
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-reader
License BSD-2-Clause
Dependencies amount 5
Dependencies jcore-xml-reader, logback-classic, jcore-descriptor-creator, jcore-utilities, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-reader
License BSD-2-Clause
Dependencies amount 5
Dependencies jcore-xml-reader, logback-classic, jcore-descriptor-creator, jcore-utilities, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-linnaeus-species-ae from group de.julielab (version 2.6.1)
Group: de.julielab Artifact: jcore-linnaeus-species-ae
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Show all versions Show documentation Show source
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jcore-medline-reader from group de.julielab (version 2.6.0)
Leveraging the JCoRe XML Reader, this project employs a Medline-enabled mapping file to map Medline XML
documents to CAS instances. The input is a directory of single XML files, each containing exactly one XML
MedlineCitation. The XML format is the one used by NCBI when downloading Medline documents in large batches from
the NCBI FTP server. However, the component currently expects single documents instead of whole
MedlineCitationSets containing sets of MedlineCitations.
Artifact jcore-medline-reader
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-medline-reader
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-descriptor-creator, jcore-xml-reader, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.0
Last update 18. December 2022
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-medline-reader
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-descriptor-creator, jcore-xml-reader, junit-jupiter-engine,
There are maybe transitive dependencies!
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