Download JAR files tagged by pubmed with all dependencies
reciter-pubmed-model from group edu.cornell.weill.reciter (version 2.0.3)
A set of classes representing a PubMed article
Group: edu.cornell.weill.reciter Artifact: reciter-pubmed-model
Show all versions Show documentation Show source
Show all versions Show documentation Show source
0 downloads
Artifact reciter-pubmed-model
Group edu.cornell.weill.reciter
Version 2.0.3
Last update 23. August 2023
Organization Weill Cornell Medicine ITS
URL https://github.com/wcmc-its/ReCiter-PubMed-Model
License The Apache License, Version 2.0
Dependencies amount 4
Dependencies jackson-annotations, aws-java-sdk-dynamodb, swagger-codegen-maven-plugin, gson,
There are maybe transitive dependencies!
Group edu.cornell.weill.reciter
Version 2.0.3
Last update 23. August 2023
Organization Weill Cornell Medicine ITS
URL https://github.com/wcmc-its/ReCiter-PubMed-Model
License The Apache License, Version 2.0
Dependencies amount 4
Dependencies jackson-annotations, aws-java-sdk-dynamodb, swagger-codegen-maven-plugin, gson,
There are maybe transitive dependencies!
jcore-pmc-reader from group de.julielab (version 2.6.1)
A UIMA reader for the Pubmed Central NXML format.
0 downloads
Artifact jcore-pmc-reader
Group de.julielab
Version 2.6.1
Last update 18. November 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 8
Dependencies slf4j-api, julie-xml-tools, jcore-types, snakeyaml, assertj-core, uima-ducc-user, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.1
Last update 18. November 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 8
Dependencies slf4j-api, julie-xml-tools, jcore-types, snakeyaml, assertj-core, uima-ducc-user, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!
konnector from group net.nprod (version 0.1.34)
A connector for PubMed, CrossREF and GNFinder (gRPC only for now) for Kotlin.
Artifact konnector
Group net.nprod
Version 0.1.34
Last update 24. April 2021
Organization not specified
URL https://github.com/bjonnh/konnector
License MIT
Dependencies amount 1
Dependencies guava,
There are maybe transitive dependencies!
Group net.nprod
Version 0.1.34
Last update 24. April 2021
Organization not specified
URL https://github.com/bjonnh/konnector
License MIT
Dependencies amount 1
Dependencies guava,
There are maybe transitive dependencies!
format-pubmed from group uk.ac.gate.plugins (version 8.5)
Document Format plugin to support reading PubMed and Cochrane text files
0 downloads
Artifact format-pubmed
Group uk.ac.gate.plugins
Version 8.5
Last update 29. May 2018
Organization GATE
URL Not specified
License GNU Lesser General Public License (LGPL), Version 3
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!
Group uk.ac.gate.plugins
Version 8.5
Last update 29. May 2018
Organization GATE
URL Not specified
License GNU Lesser General Public License (LGPL), Version 3
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!
jcore-xml-mapper from group de.julielab (version 2.6.2)
A generic XML mapper to create CAS instances reflecting contents of XML documents. Especially created
to read PubMed/Medline XML.
1 downloads
Artifact jcore-xml-mapper
Group de.julielab
Version 2.6.2
Last update 20. February 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-xml-mapper
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-types, julie-xml-tools, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.2
Last update 20. February 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-xml-mapper
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-types, julie-xml-tools, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-biosem-ae from group de.julielab (version 2.6.2)
A UIMA wrapper around the BioSem Event Extractor from the University of Amsterdam.
http://www.ncbi.nlm.nih.gov/pubmed/22859502
0 downloads
Artifact jcore-biosem-ae
Group de.julielab
Version 2.6.2
Last update 04. January 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-biosem-ae
License BSD-2-Clause
Dependencies amount 5
Dependencies jcore-descriptor-creator, commons-lang3, biosem-event-extractor, jcore-types, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.2
Last update 04. January 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-biosem-ae
License BSD-2-Clause
Dependencies amount 5
Dependencies jcore-descriptor-creator, commons-lang3, biosem-event-extractor, jcore-types, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-topic-indexing-ae from group de.julielab (version 2.6.1)
Labels LDA Topics estimated from project julielab-topic-modeling to infer document topics for PubMed
articles
Group: de.julielab Artifact: jcore-topic-indexing-ae
Show all versions Show documentation Show source
Show all versions Show documentation Show source
0 downloads
Artifact jcore-topic-indexing-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-topic-labeling-ae
License BSD-2-Clause
Dependencies amount 9
Dependencies jcore-descriptor-creator, assertj-core, slf4j-api, jcore-types, commons-configuration2, uimaj-document-annotation, jcore-utilities, julielab-topic-modeling, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-topic-labeling-ae
License BSD-2-Clause
Dependencies amount 9
Dependencies jcore-descriptor-creator, assertj-core, slf4j-api, jcore-types, commons-configuration2, uimaj-document-annotation, jcore-utilities, julielab-topic-modeling, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-pubmed-db-reader from group de.julielab (version 2.6.1)
An instantiation of the jcore-db-reader that uses the jcore-xml-mapper to retrieve and parse PubMed XML
from a PostgreSQL database. The XML format of retrieved documents is expected to follow the PubMed/MEDLINE XML
schema
that was used beginning from 2017. I.e. the root document of a document must be PubmedArticle and not,
as it was for MEDLINE until 2017, MedlineCitation.
Artifact jcore-pubmed-db-reader
Group de.julielab
Version 2.6.1
Last update 20. February 2024
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-db-reader
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-xml-db-reader, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.1
Last update 20. February 2024
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-projects/tree/master/jcore-pubmed-db-reader
License BSD-2-Clause
Dependencies amount 3
Dependencies jcore-xml-db-reader, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!
jcore-gnormplus-pubmed-db-reader from group de.julielab (version 2.6.2)
This is the GNormPlus XML DB multiplier base component that is contained in the JCoRe GNormPlus AE
project in jcore-base complemented by the pubmed XML mapping file. This is a drop-in replacement for the PubMed
DB Multiplier that runs GNormPlus after the XML data has been added to the CAS. Note that running GNormPlus
requires the presence of the GNormPlus resources and external programs in the working directory of the pipeline.
0 downloads
Artifact jcore-gnormplus-pubmed-db-reader
Group de.julielab
Version 2.6.2
Last update 14. February 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-gnormplus-pubmed-db-reader
License BSD 2-Clause
Dependencies amount 5
Dependencies jcore-gnormplus-ae, slf4j-api, jcore-descriptor-creator, jcore-types, junit-jupiter-engine,
There are maybe transitive dependencies!
Group de.julielab
Version 2.6.2
Last update 14. February 2024
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-gnormplus-pubmed-db-reader
License BSD 2-Clause
Dependencies amount 5
Dependencies jcore-gnormplus-ae, slf4j-api, jcore-descriptor-creator, jcore-types, junit-jupiter-engine,
There are maybe transitive dependencies!
fastcontext from group edu.utah.bmi.nlp (version 2.0.0.0-jdk11)
FastContext is an optimized Java implementation of ConText algorithm
(https://www.ncbi.nlm.nih.gov/pubmed/23920642). It runs two orders of magnitude faster than previous two
popular implementations: JavaConText and GeneralConText.
Version 2.0 includes UIMA wrapper
0 downloads
Artifact fastcontext
Group edu.utah.bmi.nlp
Version 2.0.0.0-jdk11
Last update 05. February 2024
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies nlp-core,
There are maybe transitive dependencies!
Group edu.utah.bmi.nlp
Version 2.0.0.0-jdk11
Last update 05. February 2024
Organization not specified
URL Not specified
License not specified
Dependencies amount 1
Dependencies nlp-core,
There are maybe transitive dependencies!
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