htsjdk.samtools.cram.digest.Crc32Hasher Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of htsjdk Show documentation

A Java API for high-throughput sequencing data (HTS) formats

There is a newer version: 4.1.3

package htsjdk.samtools.cram.digest;

import java.nio.ByteOrder;
import java.util.zip.CRC32;

final class Crc32Hasher extends AbstractSerialDigest {
    private final CRC32 crc32 = new CRC32();
    private final ByteOrder byteOrder = ByteOrder.LITTLE_ENDIAN;

    Crc32Hasher(final Combine combine) {
        super(combine, null);
    }

    @Override
    protected void resetAndUpdate(final byte[] data) {
        crc32.reset();
        crc32.update(data);
    }

    @Override
    protected Integer getValue() {
        return (int) (crc32.getValue() & 0xFFFFFFFFL);
    }

    @Override
    protected byte[] asByteArray() {
        final byte[] array = new byte[4];
        if (byteOrder == ByteOrder.LITTLE_ENDIAN) {
            array[3] = (byte) ((value >>> 24) & 0xFF);
            array[2] = (byte) ((value >>> 16) & 0xFF);
            array[1] = (byte) ((value >>> 8) & 0xFF);
            array[0] = (byte) ((value) & 0xFF);
        } else {
            array[0] = (byte) ((value >>> 24) & 0xFF);
            array[1] = (byte) ((value >>> 16) & 0xFF);
            array[2] = (byte) ((value >>> 8) & 0xFF);
            array[3] = (byte) ((value) & 0xFF);
        }
        return array;
    }

}