htsjdk.samtools.cram.encoding.readfeatures.ReadFeature Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of htsjdk Show documentation

A Java API for high-throughput sequencing data (HTS) formats

There is a newer version: 4.1.3

/**
 * ****************************************************************************
 * Copyright 2013 EMBL-EBI
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * 

 * http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 * ****************************************************************************
 */
package htsjdk.samtools.cram.encoding.readfeatures;

/**
 * An interface to capture data in read coordinates.
 */
public interface ReadFeature {
    /**
     * @return zero-based position in the read
     */
    int getPosition();

    /**
     * Read features are distinguished by operator, similar to cigar operator.
     * @return type of the read feature
     */
    byte getOperator();
}