htsjdk.samtools.fastq.AsyncFastqWriter Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of htsjdk Show documentation

A Java API for high-throughput sequencing data (HTS) formats

There is a newer version: 4.1.3

package htsjdk.samtools.fastq;

import htsjdk.samtools.util.AbstractAsyncWriter;

/**
 * Implementation of a FastqWriter that provides asynchronous output.
 * @author Tim Fennell
 */
public class AsyncFastqWriter extends AbstractAsyncWriter implements FastqWriter {
    private final FastqWriter writer;

    public AsyncFastqWriter(final FastqWriter out, final int queueSize) {
        super(queueSize);
        this.writer = out;
    }

    @Override protected String getThreadNamePrefix() { return "FastqWriterThread-"; }
    @Override protected void synchronouslyWrite(final FastqRecord item) { this.writer.write(item); }
    @Override protected void synchronouslyClose() { this.writer.close(); }
}