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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.

Files of the artifact mia-plugin version 1.6.8 from the group io.github.mianalysis.

Artifact mia-plugin
Group io.github.mianalysis
Version 1.6.8
Last update 17. September 2024
Tags: measured objects workflows datasets enabled content default high filtered related provides transformed which image modular batch assembling allowing analysis easy modularimageanalysis framework plugin imagej detected processing object
Organization University of Bristol
URL https://github.com/mianalysis/mia
License GNU General Public License v3+
Dependencies amount 10
Dependencies mia-core, mia-modules, mia-macros, mia-bonej, mia-deepimagej, mia-ptbiop, mia-stardist, poi, poi-ooxml-lite, poi-ooxml,
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Source code of mia-plugin version 1.6.8

META-INF
META-INF.META-INF.MANIFEST.MF
META-INF.maven.io.github.mianalysis.mia-plugin
META-INF.maven.io.github.mianalysis.mia-plugin.META-INF.maven.io.github.mianalysis.mia-plugin.pom.properties
META-INF.maven.io.github.mianalysis.mia-plugin.META-INF.maven.io.github.mianalysis.mia-plugin.pom.xml
icons
icons.icons.Dual Ring-1s-12px.gif
icons.icons.Dual Ring-1s-12px.txt
icons.icons.Dual Ring-1s_DM-12px.gif
icons.icons.Logo_wide_32.png
icons.icons.alert_black_12px.png
icons.icons.alert_darkgreyDM_12px.png
icons.icons.arrowclosed_greenDM_12px.png
icons.icons.arrowclosed_green_12px.png
icons.icons.arrowclosed_redDM_12px.png
icons.icons.arrowclosed_red_12px.png
icons.icons.arrowopen_blackDM_12px.png
icons.icons.arrowopen_black_12px.png
icons.icons.arrowopen_redDM_12px.png
icons.icons.arrowopen_red_12px.png
icons.icons.check-mark_blackDM_12px.png
icons.icons.check-mark_black_12px.png
icons.icons.circle_blue_12px.png
icons.icons.close_window_black_12px.png
icons.icons.close_window_darkgreyDM_12px.png
icons.icons.close_window_darkgrey_12px.png
icons.icons.delete-2_blackDM_12px.png
icons.icons.delete-2_black_12px.png
icons.icons.dot_blue_12px.png
icons.icons.downarrow_blue_12px.png
icons.icons.downarrow_darkblueDM_12px.png
icons.icons.downarrow_darkblue_12px.png
icons.icons.eyeclosed.svg
icons.icons.eyeclosed_blackDM_12px.png
icons.icons.eyeclosed_black_12px.png
icons.icons.eyeclosed_grey_12px.png
icons.icons.eyeclosed_orangeDM_12px.png
icons.icons.eyeclosed_orange_12px.png
icons.icons.eyeclosed_redDM_12px.png
icons.icons.eyeclosed_red_12px.png
icons.icons.eyeopen_blackDM_12px.png
icons.icons.eyeopen_black_12px.png
icons.icons.eyeopen_grey_12px.png
icons.icons.eyeopen_orangeDM_12px.png
icons.icons.eyeopen_orange_12px.png
icons.icons.eyeopen_redDM_12px.png
icons.icons.eyeopen_red_12px.png
icons.icons.folder-3-16.png
icons.icons.leftarrow_blue_12px.png
icons.icons.leftarrow_darkblueDM_12px.png
icons.icons.leftarrow_darkblue_12px.png
icons.icons.minus-3-16.png
icons.icons.plus-3-16.png
icons.icons.power_blackDM_strike_12px.png
icons.icons.power_black_strike_12px.png
icons.icons.power_darkblueDM_12px.png
icons.icons.power_darkblue_12px.png
icons.icons.power_greenDM_12px.png
icons.icons.power_green_12px.png
icons.icons.power_orangeDM_12px.png
icons.icons.power_orange_12px.png
icons.icons.power_redDM_12px.png
icons.icons.power_red_12px.png
icons.icons.refresh_blackDM_12px.png
icons.icons.refresh_black_12px.png
icons.icons.rightarrow_blue_12px.png
icons.icons.rightarrow_darkblueDM_12px.png
icons.icons.rightarrow_darkblue_12px.png
icons.icons.running-man-16.png
icons.icons.save-16.png
icons.icons.search_black_12px.png
icons.icons.search_darkgreyDM_12px.png
icons.icons.search_darkgrey_12px.png
icons.icons.skiparrow_orangeDM_12px.png
icons.icons.skiparrow_orange_12px.png
icons.icons.stop-3-16.png
icons.icons.warning_redDM_12px.png
icons.icons.warning_red_12px.png
icons.icons.x-mark-3-12.png
images
images.images.Logo.svg
images.images.Logo_splash.png
images.images.Logo_splash_3110.png
images.images.Logo_text_UoB_128.png
images.images.Logo_text_UoB_64.png
images.images.Logo_text_UoB_64_DM.png
images.images.Pony.gif
io.github.mianalysis.mia
io.github.mianalysis.mia.io.github.mianalysis.mia.MIA_
io.github.mianalysis.mia.gui
io.github.mianalysis.mia.gui.io.github.mianalysis.mia.gui.ComponentFactory
io.github.mianalysis.mia.gui.io.github.mianalysis.mia.gui.GUI
io.github.mianalysis.mia.gui.io.github.mianalysis.mia.gui.GUIAnalysisHandler
io.github.mianalysis.mia.gui.io.github.mianalysis.mia.gui.HyperlinkOpener
io.github.mianalysis.mia.gui.io.github.mianalysis.mia.gui.Splash
io.github.mianalysis.mia.gui.io.github.mianalysis.mia.gui.Themes
io.github.mianalysis.mia.gui.io.github.mianalysis.mia.gui.UndoRedoStore
io.github.mianalysis.mia.gui.parametercontrols
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.AddParametersButton
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.AdjustParameterGroupButton
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.BooleanParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.ChoiceArrayParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.FileParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.GenericButton
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.MessageArea
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.ModuleChoiceParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.RefSelectorParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.SeparatorParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.SeriesSelector
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.SwingParameterControlFactory
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.TextAreaParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.TextParameter
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.TextSwitchableParameterControl
io.github.mianalysis.mia.gui.parametercontrols.io.github.mianalysis.mia.gui.parametercontrols.WiderDropDownCombo
io.github.mianalysis.mia.gui.regions
io.github.mianalysis.mia.gui.regions.io.github.mianalysis.mia.gui.regions.ClosePanelButton
io.github.mianalysis.mia.gui.regions.io.github.mianalysis.mia.gui.regions.ReferenceEditingMenu
io.github.mianalysis.mia.gui.regions.abstrakt
io.github.mianalysis.mia.gui.regions.abstrakt.io.github.mianalysis.mia.gui.regions.abstrakt.AbstractPanel
io.github.mianalysis.mia.gui.regions.abstrakt.io.github.mianalysis.mia.gui.regions.abstrakt.AnalysisControlButton
io.github.mianalysis.mia.gui.regions.abstrakt.io.github.mianalysis.mia.gui.regions.abstrakt.ModuleControlButton
io.github.mianalysis.mia.gui.regions.availablemodulelist
io.github.mianalysis.mia.gui.regions.availablemodulelist.io.github.mianalysis.mia.gui.regions.availablemodulelist.ListUnavailableModules
io.github.mianalysis.mia.gui.regions.availablemodulelist.io.github.mianalysis.mia.gui.regions.availablemodulelist.ModuleListMenu
io.github.mianalysis.mia.gui.regions.availablemodulelist.io.github.mianalysis.mia.gui.regions.availablemodulelist.PopupMenuItem
io.github.mianalysis.mia.gui.regions.availablemodulelist.io.github.mianalysis.mia.gui.regions.availablemodulelist.SearchForModuleItem
io.github.mianalysis.mia.gui.regions.documentation
io.github.mianalysis.mia.gui.regions.documentation.io.github.mianalysis.mia.gui.regions.documentation.DocumentationPanel
io.github.mianalysis.mia.gui.regions.editingpanel
io.github.mianalysis.mia.gui.regions.editingpanel.io.github.mianalysis.mia.gui.regions.editingpanel.EditingControlPanel
io.github.mianalysis.mia.gui.regions.editingpanel.io.github.mianalysis.mia.gui.regions.editingpanel.EditingPanel
io.github.mianalysis.mia.gui.regions.filelist
io.github.mianalysis.mia.gui.regions.filelist.io.github.mianalysis.mia.gui.regions.filelist.FileListColumnSelectorMenu
io.github.mianalysis.mia.gui.regions.filelist.io.github.mianalysis.mia.gui.regions.filelist.FileListPanel
io.github.mianalysis.mia.gui.regions.helpandnotes
io.github.mianalysis.mia.gui.regions.helpandnotes.io.github.mianalysis.mia.gui.regions.helpandnotes.HelpArea
io.github.mianalysis.mia.gui.regions.helpandnotes.io.github.mianalysis.mia.gui.regions.helpandnotes.HelpNotesPanel
io.github.mianalysis.mia.gui.regions.helpandnotes.io.github.mianalysis.mia.gui.regions.helpandnotes.HelpPanel
io.github.mianalysis.mia.gui.regions.helpandnotes.io.github.mianalysis.mia.gui.regions.helpandnotes.NotesArea
io.github.mianalysis.mia.gui.regions.helpandnotes.io.github.mianalysis.mia.gui.regions.helpandnotes.NotesPanel
io.github.mianalysis.mia.gui.regions.menubar
io.github.mianalysis.mia.gui.regions.menubar.io.github.mianalysis.mia.gui.regions.menubar.CustomMenuBar
io.github.mianalysis.mia.gui.regions.menubar.io.github.mianalysis.mia.gui.regions.menubar.MenuCheckbox
io.github.mianalysis.mia.gui.regions.menubar.io.github.mianalysis.mia.gui.regions.menubar.MenuItem
io.github.mianalysis.mia.gui.regions.menubar.io.github.mianalysis.mia.gui.regions.menubar.MenuLogCheckbox
io.github.mianalysis.mia.gui.regions.parameterlist
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.DisableRefsButton
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.DisableableCheck
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.EnableRefsButton
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.ExportCheck
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.ExportEnableButton
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.ExportName
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.ParametersPanel
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.ResetExport
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.ShowProcessingTitleCheck
io.github.mianalysis.mia.gui.regions.parameterlist.io.github.mianalysis.mia.gui.regions.parameterlist.VisibleCheck
io.github.mianalysis.mia.gui.regions.processingpanel
io.github.mianalysis.mia.gui.regions.processingpanel.io.github.mianalysis.mia.gui.regions.processingpanel.ModuleTitle
io.github.mianalysis.mia.gui.regions.processingpanel.io.github.mianalysis.mia.gui.regions.processingpanel.ProcessingControlPanel
io.github.mianalysis.mia.gui.regions.processingpanel.io.github.mianalysis.mia.gui.regions.processingpanel.ProcessingPanel
io.github.mianalysis.mia.gui.regions.progressandstatus
io.github.mianalysis.mia.gui.regions.progressandstatus.io.github.mianalysis.mia.gui.regions.progressandstatus.ProgressBarPanel
io.github.mianalysis.mia.gui.regions.progressandstatus.io.github.mianalysis.mia.gui.regions.progressandstatus.StatusPanel
io.github.mianalysis.mia.gui.regions.progressandstatus.io.github.mianalysis.mia.gui.regions.progressandstatus.StatusTextField
io.github.mianalysis.mia.gui.regions.search
io.github.mianalysis.mia.gui.regions.search.io.github.mianalysis.mia.gui.regions.search.AddModuleFromSearchButton
io.github.mianalysis.mia.gui.regions.search.io.github.mianalysis.mia.gui.regions.search.ResultsPanel
io.github.mianalysis.mia.gui.regions.search.io.github.mianalysis.mia.gui.regions.search.SearchButton
io.github.mianalysis.mia.gui.regions.search.io.github.mianalysis.mia.gui.regions.search.SearchIncludeCheckbox
io.github.mianalysis.mia.gui.regions.search.io.github.mianalysis.mia.gui.regions.search.SearchPanel
io.github.mianalysis.mia.gui.regions.workflowmodules
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.DraggableTableModel
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.DraggableTransferHandler
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.EvalButton
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.InputOutputPanel
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModuleButton
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModuleDataFlavor
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModuleEnabledButton
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModuleListPanel
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModuleName
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModulePanel
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModuleTable
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ModuleTransfer
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.SeparatorButton
io.github.mianalysis.mia.gui.regions.workflowmodules.io.github.mianalysis.mia.gui.regions.workflowmodules.ShowOutputButton
io.github.mianalysis.mia.lostandfound.images.transform.registration
io.github.mianalysis.mia.lostandfound.images.transform.registration.io.github.mianalysis.mia.lostandfound.images.transform.registration.AffineManualLostFound
io.github.mianalysis.mia.lostandfound.images.transform.registration.io.github.mianalysis.mia.lostandfound.images.transform.registration.UnwarpManualLostFound
io.github.mianalysis.mia.module.images.process.threshold
io.github.mianalysis.mia.module.images.process.threshold.io.github.mianalysis.mia.module.images.process.threshold.LiveManualThreshold
io.github.mianalysis.mia.module.images.transform.registration
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.AffineManual
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.RegisterImages
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.UnwarpManual
io.github.mianalysis.mia.module.objects.detect
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.ManuallyIdentifyObjects
io.github.mianalysis.mia.module.objects.filter
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.LiveFilterByMeasurement
io.github.mianalysis.mia.object.parameters
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.GenericButtonP
io.github.mianalysis.mia.object.system
io.github.mianalysis.mia.object.system.io.github.mianalysis.mia.object.system.SwingPreferences
io.github.mianalysis.mia.process.logging
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.SwingProgressBar
io.github.mianalysis.mia.process.selectors
io.github.mianalysis.mia.process.selectors.io.github.mianalysis.mia.process.selectors.ClassSelector
io.github.mianalysis.mia.process.selectors.io.github.mianalysis.mia.process.selectors.Interactable
io.github.mianalysis.mia.process.selectors.io.github.mianalysis.mia.process.selectors.NonOverlaySelector
io.github.mianalysis.mia.process.selectors.io.github.mianalysis.mia.process.selectors.ObjRoi
io.github.mianalysis.mia.process.selectors.io.github.mianalysis.mia.process.selectors.ObjectSelector
io.github.mianalysis.mia.process.selectors.io.github.mianalysis.mia.process.selectors.PointPairSelector
.plugins.config
.project.properties
templatemd
templatemd.templatemd.acknowledgements.md
templatemd.templatemd.citing.md
templatemd.templatemd.creatingWorkflow.md
templatemd.templatemd.installation.md
templatemd.templatemd.introduction.md
templatemd.templatemd.note.md
templatemd.templatemd.usingExistingWorkflow.md




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