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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.

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- In Fiji, run the plugin from Plugins > ModularImageAnalysis (MIA)
- Select View > "Switch to editing view" from the menu bar
- Modules are added and removed from the workflow using the "+" and "-" buttons
- Module order can be shifted with the arrow buttons
- Selecting a module will display its relevant parameters in the right panel
- Checkboxes to the right of each module determine if they are visible in the processing view (default view)
- Input files and folders are specified using the "Input control" and Excel file export is configured in the "Output control"