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Download nextflow JAR 24.09.1-edge with all dependencies

A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner

Files of the artifact nextflow version 24.09.1-edge from the group io.nextflow.

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Artifact nextflow
Group io.nextflow
Version 24.09.1-edge
Last update 13. October 2024
Tags: scalable concept simplifies portable manner around that pipelines parallel writing modelled pipe unix
Organization not specified
URL http://www.nextflow.io
License The Apache License, Version 2.0
Dependencies amount 28
Dependencies nf-commons, nf-httpfs, groovy, groovy-nio, groovy-xml, groovy-json, groovy-templates, jcl-over-slf4j, jul-to-slf4j, log4j-over-slf4j, logback-classic, logback-core, gpars, grengine, commons-lang, commons-codec, commons-io, jcommander, kryo, leveldb, org.eclipse.jgit, activation, mail, snakeyaml, jsoup, jline, pf4j, failsafe,
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Source code of nextflow version 24.09.1-edge

META-INF

META-INF.META-INF.MANIFEST.MF

META-INF.META-INF.build-info.properties

META-INF.META-INF.extensions.idx

META-INF.META-INF.plugins-info.txt

META-INF.services

META-INF.services.META-INF.services.org.codehaus.groovy.runtime.ExtensionModule

com.esotericsoftware.minlog

com.esotericsoftware.minlog.com.esotericsoftware.minlog.Log

de.javakaffee.kryoserializers

de.javakaffee.kryoserializers.dekaffee.kryoserializers.UnmodifiableCollectionsSerializer

groovy.runtime.metaclass

groovy.runtime.metaclass.groovy.runtime.metaclass.ChannelFactory

groovy.runtime.metaclass.groovy.runtime.metaclass.CustomMetaClassCreationHandle

groovy.runtime.metaclass.groovy.runtime.metaclass.ExtensionProvider

groovy.runtime.metaclass.groovy.runtime.metaclass.NextflowDelegatingMetaClass

groovy.runtime.metaclass.groovy.runtime.metaclass.NumberDelegatingMetaClass

nextflow

nextflow.nextflow.Channel.groovy

nextflow.nextflow.NF.groovy

nextflow.nextflow.Nextflow.groovy

nextflow.nextflow.NextflowMeta.groovy

nextflow.nextflow.Session.groovy

nextflow.ast

nextflow.ast.nextflow.ast.ASTHelpers.groovy

nextflow.ast.nextflow.ast.GStringToLazyVisitor.groovy

nextflow.ast.nextflow.ast.LangHelpers

nextflow.ast.nextflow.ast.NextflowDSL.groovy

nextflow.ast.nextflow.ast.NextflowDSLImpl.groovy

nextflow.ast.nextflow.ast.NextflowXform.groovy

nextflow.ast.nextflow.ast.NextflowXformImpl.groovy

nextflow.ast.nextflow.ast.OpXform.groovy

nextflow.ast.nextflow.ast.OpXformImpl.groovy

nextflow.ast.nextflow.ast.TaskCmdXform.groovy

nextflow.ast.nextflow.ast.TaskCmdXformVisitor.groovy

nextflow.ast.nextflow.ast.TaskTemplateVarsXform.groovy

nextflow.ast.nextflow.ast.TaskTemplateVarsXformImpl.groovy

nextflow.ast.nextflow.ast.TaskTemplateVisitor.groovy

nextflow.ast.nextflow.ast.VariableVisitor.groovy

nextflow.cache

nextflow.cache.nextflow.cache.CacheDB.groovy

nextflow.cache.nextflow.cache.CacheFactory.groovy

nextflow.cache.nextflow.cache.CacheStore.groovy

nextflow.cache.nextflow.cache.DefaultCacheFactory.groovy

nextflow.cache.nextflow.cache.DefaultCacheStore.groovy

nextflow.cli

nextflow.cli.nextflow.cli.CacheBase.groovy

nextflow.cli.nextflow.cli.CliOptions.groovy

nextflow.cli.nextflow.cli.CmdBase.groovy

nextflow.cli.nextflow.cli.CmdClean.groovy

nextflow.cli.nextflow.cli.CmdClone.groovy

nextflow.cli.nextflow.cli.CmdConfig.groovy

nextflow.cli.nextflow.cli.CmdConsole.groovy

nextflow.cli.nextflow.cli.CmdDrop.groovy

nextflow.cli.nextflow.cli.CmdFs.groovy

nextflow.cli.nextflow.cli.CmdHelp.groovy

nextflow.cli.nextflow.cli.CmdHelper.groovy

nextflow.cli.nextflow.cli.CmdInfo.groovy

nextflow.cli.nextflow.cli.CmdInspect.groovy

nextflow.cli.nextflow.cli.CmdKubeRun.groovy

nextflow.cli.nextflow.cli.CmdList.groovy

nextflow.cli.nextflow.cli.CmdLog.groovy

nextflow.cli.nextflow.cli.CmdNode.groovy

nextflow.cli.nextflow.cli.CmdPlugin.groovy

nextflow.cli.nextflow.cli.CmdPull.groovy

nextflow.cli.nextflow.cli.CmdRun.groovy

nextflow.cli.nextflow.cli.CmdSecret.groovy

nextflow.cli.nextflow.cli.CmdSelfUpdate.groovy

nextflow.cli.nextflow.cli.CmdView.groovy

nextflow.cli.nextflow.cli.HubOptions.groovy

nextflow.cli.nextflow.cli.Launcher.groovy

nextflow.cli.nextflow.cli.PluginAbstractExec.groovy

nextflow.cli.nextflow.cli.PluginExecAware.groovy

nextflow.cli.nextflow.cli.usageAware.groovy

nextflow.cloud

nextflow.cloud.nextflow.cloud.CloudSpotTerminationException.groovy

nextflow.cloud.nextflow.cloud.CloudTransferOptions.groovy

nextflow.cloud.aws

nextflow.cloud.aws.nextflow.cloud.aws.cloud-boot.txt

nextflow.cloud.google

nextflow.cloud.google.nextflow.cloud.google.cloud-boot.txt

nextflow.cloud.types

nextflow.cloud.types.nextflow.cloud.types.CloudInstance.groovy

nextflow.cloud.types.nextflow.cloud.types.CloudInstanceStatus.groovy

nextflow.cloud.types.nextflow.cloud.types.CloudInstanceType.groovy

nextflow.cloud.types.nextflow.cloud.types.CloudMachineInfo.groovy

nextflow.cloud.types.nextflow.cloud.types.CloudSpotPrice.groovy

nextflow.cloud.types.nextflow.cloud.types.PriceModel.groovy

nextflow.conda

nextflow.conda.nextflow.conda.CondaCache.groovy

nextflow.conda.nextflow.conda.CondaConfig.groovy

nextflow.config

nextflow.config.nextflow.config.CascadingConfig.groovy

nextflow.config.nextflow.config.ConfigBase.groovy

nextflow.config.nextflow.config.ConfigBuilder.groovy

nextflow.config.nextflow.config.ConfigClosurePlaceholder.groovy

nextflow.config.nextflow.config.ConfigField.groovy

nextflow.config.nextflow.config.ConfigMap.groovy

nextflow.config.nextflow.config.ConfigParser.groovy

nextflow.config.nextflow.config.ConfigTransform.groovy

nextflow.config.nextflow.config.ConfigTransformImpl.groovy

nextflow.config.nextflow.config.Manifest.groovy

nextflow.config.nextflow.config.PluginsDsl.groovy

nextflow.config.nextflow.config.StripSecretsXform.groovy

nextflow.config.nextflow.config.StripSecretsXformImpl.groovy

nextflow.container

nextflow.container.nextflow.container.ApptainerBuilder.groovy

nextflow.container.nextflow.container.ApptainerCache.groovy

nextflow.container.nextflow.container.CharliecloudBuilder.groovy

nextflow.container.nextflow.container.CharliecloudCache.groovy

nextflow.container.nextflow.container.ContainerBuilder.groovy

nextflow.container.nextflow.container.ContainerConfig.groovy

nextflow.container.nextflow.container.ContainerHandler.groovy

nextflow.container.nextflow.container.ContainerNameValidator.groovy

nextflow.container.nextflow.container.DockerBuilder.groovy

nextflow.container.nextflow.container.PodmanBuilder.groovy

nextflow.container.nextflow.container.SarusBuilder.groovy

nextflow.container.nextflow.container.ShifterBuilder.groovy

nextflow.container.nextflow.container.SingularityBuilder.groovy

nextflow.container.nextflow.container.SingularityCache.groovy

nextflow.container.nextflow.container.UdockerBuilder.groovy

nextflow.container.inspect

nextflow.container.inspect.nextflow.container.inspect.ContainerInspectMode.groovy

nextflow.container.inspect.nextflow.container.inspect.ContainersInspector.groovy

nextflow.container.resolver

nextflow.container.resolver.nextflow.container.resolver.ContainerInfo.groovy

nextflow.container.resolver.nextflow.container.resolver.ContainerResolver.groovy

nextflow.container.resolver.nextflow.container.resolver.ContainerResolverProvider.groovy

nextflow.container.resolver.nextflow.container.resolver.DefaultContainerResolver.groovy

nextflow.daemon

nextflow.daemon.nextflow.daemon.DaemonLauncher.groovy

nextflow.dag

nextflow.dag.nextflow.dag.DAG.groovy

nextflow.dag.nextflow.dag.DagRenderer.groovy

nextflow.dag.nextflow.dag.DotRenderer.groovy

nextflow.dag.nextflow.dag.GexfRenderer.groovy

nextflow.dag.nextflow.dag.GraphVizRenderer.groovy

nextflow.dag.nextflow.dag.MermaidHtmlRenderer.groovy

nextflow.dag.nextflow.dag.MermaidRenderer.groovy

nextflow.dag.nextflow.dag.MultipleInputChannelException.groovy

nextflow.dag.nextflow.dag.MultipleOutputChannelException.groovy

nextflow.dag.nextflow.dag.NodeMarker.groovy

nextflow.dag.nextflow.dag.mermaid.dag.template.html

nextflow.datasource

nextflow.datasource.nextflow.datasource.SraExplorer.groovy

nextflow.datasource.nextflow.datasource.SraRetryConfig.groovy

nextflow.exception

nextflow.exception.nextflow.exception.AbortRunException.groovy

nextflow.exception.nextflow.exception.AbortSignalException.groovy

nextflow.exception.nextflow.exception.AmbiguousPipelineNameException.groovy

nextflow.exception.nextflow.exception.ConfigParseException.groovy

nextflow.exception.nextflow.exception.DuplicateChannelNameException.groovy

nextflow.exception.nextflow.exception.DuplicateModuleFunctionException.groovy

nextflow.exception.nextflow.exception.DuplicateModuleIncludeException.groovy

nextflow.exception.nextflow.exception.DuplicateProcessInvocation.groovy

nextflow.exception.nextflow.exception.FailedGuardException.groovy

nextflow.exception.nextflow.exception.IllegalArityException.groovy

nextflow.exception.nextflow.exception.IllegalConfigException.groovy

nextflow.exception.nextflow.exception.IllegalDirectiveException.groovy

nextflow.exception.nextflow.exception.IllegalFileException.groovy

nextflow.exception.nextflow.exception.IllegalInvocationException.groovy

nextflow.exception.nextflow.exception.IllegalModulePath.groovy

nextflow.exception.nextflow.exception.K8sOutOfCpuException.groovy

nextflow.exception.nextflow.exception.K8sOutOfMemoryException.groovy

nextflow.exception.nextflow.exception.MissingCredentialsException.groovy

nextflow.exception.nextflow.exception.MissingFileException.groovy

nextflow.exception.nextflow.exception.MissingLibraryException.groovy

nextflow.exception.nextflow.exception.MissingModuleComponentException.groovy

nextflow.exception.nextflow.exception.MissingProcessException.groovy

nextflow.exception.nextflow.exception.MissingValueException.groovy

nextflow.exception.nextflow.exception.NodeTerminationException.groovy

nextflow.exception.nextflow.exception.PlainExceptionMessage.groovy

nextflow.exception.nextflow.exception.ProcessEvalException.groovy

nextflow.exception.nextflow.exception.ProcessException.groovy

nextflow.exception.nextflow.exception.ProcessFailedException.groovy

nextflow.exception.nextflow.exception.ProcessNonZeroExitStatusException.groovy

nextflow.exception.nextflow.exception.ProcessRetryableException.groovy

nextflow.exception.nextflow.exception.ProcessStageException.groovy

nextflow.exception.nextflow.exception.ProcessSubmitException.groovy

nextflow.exception.nextflow.exception.ProcessSubmitTimeoutException.groovy

nextflow.exception.nextflow.exception.ProcessTemplateException.groovy

nextflow.exception.nextflow.exception.ProcessUnrecoverableException.groovy

nextflow.exception.nextflow.exception.RateLimitExceededException.groovy

nextflow.exception.nextflow.exception.ScriptCompilationException.groovy

nextflow.exception.nextflow.exception.ScriptRuntimeException.groovy

nextflow.exception.nextflow.exception.ShowOnlyExceptionMessage.groovy

nextflow.exception.nextflow.exception.StopSplitIterationException.groovy

nextflow.exception.nextflow.exception.UnexpectedException.groovy

nextflow.exception.nextflow.exception.WorkflowScriptErrorException.groovy

nextflow.executor

nextflow.executor.nextflow.executor.AbstractGridExecutor.groovy

nextflow.executor.nextflow.executor.BashFunLib.groovy

nextflow.executor.nextflow.executor.BashTemplateEngine.groovy

nextflow.executor.nextflow.executor.BashWrapperBuilder.groovy

nextflow.executor.nextflow.executor.BatchCleanup.groovy

nextflow.executor.nextflow.executor.BridgeExecutor.groovy

nextflow.executor.nextflow.executor.CachedTaskHandler.groovy

nextflow.executor.nextflow.executor.CondorExecutor.groovy

nextflow.executor.nextflow.executor.CrgExecutor.groovy

nextflow.executor.nextflow.executor.Executor.groovy

nextflow.executor.nextflow.executor.ExecutorFactory.groovy

nextflow.executor.nextflow.executor.FluxExecutor.groovy

nextflow.executor.nextflow.executor.GridTaskHandler.groovy

nextflow.executor.nextflow.executor.HyperQueueExecutor.groovy

nextflow.executor.nextflow.executor.LsfExecutor.groovy

nextflow.executor.nextflow.executor.MoabExecutor.groovy

nextflow.executor.nextflow.executor.NopeExecutor.groovy

nextflow.executor.nextflow.executor.NqsiiExecutor.groovy

nextflow.executor.nextflow.executor.OarExecutor.groovy

nextflow.executor.nextflow.executor.PbsExecutor.groovy

nextflow.executor.nextflow.executor.PbsProExecutor.groovy

nextflow.executor.nextflow.executor.ScriptFileCopyStrategy.groovy

nextflow.executor.nextflow.executor.SgeExecutor.groovy

nextflow.executor.nextflow.executor.SimpleFileCopyStrategy.groovy

nextflow.executor.nextflow.executor.SlurmExecutor.groovy

nextflow.executor.nextflow.executor.StoredTaskHandler.groovy

nextflow.executor.nextflow.executor.SupportedScriptTypes.groovy

nextflow.executor.nextflow.executor.TaskArrayExecutor.groovy

nextflow.executor.nextflow.executor.command-env.txt

nextflow.executor.nextflow.executor.command-run.txt

nextflow.executor.nextflow.executor.command-trace.txt

nextflow.executor.local

nextflow.executor.local.nextflow.executor.local.LocalExecutor.groovy

nextflow.executor.local.nextflow.executor.local.LocalTaskHandler.groovy

nextflow.executor.local.nextflow.executor.local.NativeTaskHandler.groovy

nextflow.executor

nextflow.executor.nextflow.executor.modules-env.txt

nextflow.executor.res

nextflow.executor.res.nextflow.executor.res.AcceleratorResource.groovy

nextflow.executor.res.nextflow.executor.res.DiskResource.groovy

nextflow.extension

nextflow.extension.nextflow.extension.BranchOp.groovy

nextflow.extension.nextflow.extension.BufferOp.groovy

nextflow.extension.nextflow.extension.CH.groovy

nextflow.extension.nextflow.extension.CaptureProperties.groovy

nextflow.extension.nextflow.extension.ChannelEx.groovy

nextflow.extension.nextflow.extension.CollectFileOp.groovy

nextflow.extension.nextflow.extension.CollectOp.groovy

nextflow.extension.nextflow.extension.CombineOp.groovy

nextflow.extension.nextflow.extension.ConcatOp.groovy

nextflow.extension.nextflow.extension.CrossOp.groovy

nextflow.extension.nextflow.extension.DataflowHelper.groovy

nextflow.extension.nextflow.extension.DefaultMergeClosure.groovy

nextflow.extension.nextflow.extension.DumpHelper.groovy

nextflow.extension.nextflow.extension.DumpOp.groovy

nextflow.extension.nextflow.extension.GroupKey.groovy

nextflow.extension.nextflow.extension.GroupTupleOp.groovy

nextflow.extension.nextflow.extension.IntoOp.groovy

nextflow.extension.nextflow.extension.JoinOp.groovy

nextflow.extension.nextflow.extension.KeyPair.groovy

nextflow.extension.nextflow.extension.MapOp.groovy

nextflow.extension.nextflow.extension.MergeOp.groovy

nextflow.extension.nextflow.extension.MixOp.groovy

nextflow.extension.nextflow.extension.MultiMapOp.groovy

nextflow.extension.nextflow.extension.OpCall.groovy

nextflow.extension.nextflow.extension.OperatorImpl.groovy

nextflow.extension.nextflow.extension.PhaseOp.groovy

nextflow.extension.nextflow.extension.PublishOp.groovy

nextflow.extension.nextflow.extension.RandomSampleOp.groovy

nextflow.extension.nextflow.extension.SplitOp.groovy

nextflow.extension.nextflow.extension.SplitterMergeClosure.groovy

nextflow.extension.nextflow.extension.TakeOp.groovy

nextflow.extension.nextflow.extension.TapOp.groovy

nextflow.extension.nextflow.extension.ToListOp.groovy

nextflow.extension.nextflow.extension.TransposeOp.groovy

nextflow.extension.nextflow.extension.UntilManyOp.groovy

nextflow.extension.nextflow.extension.UntilOp.groovy

nextflow.file

nextflow.file.nextflow.file.DirListener.groovy

nextflow.file.nextflow.file.DirWatcher.groovy

nextflow.file.nextflow.file.DirWatcherV2.groovy

nextflow.file.nextflow.file.FileCollector.groovy

nextflow.file.nextflow.file.FilePorter.groovy

nextflow.file.nextflow.file.PathVisitor.groovy

nextflow.file.nextflow.file.SequentialFileStore.groovy

nextflow.file.nextflow.file.SimpleFileCollector.groovy

nextflow.file.nextflow.file.SlurperEx.groovy

nextflow.file.nextflow.file.SortFileCollector.groovy

nextflow.fusion

nextflow.fusion.nextflow.fusion.FusionAwareTask.groovy

nextflow.fusion.nextflow.fusion.FusionConfig.groovy

nextflow.fusion.nextflow.fusion.FusionEnv.groovy

nextflow.fusion.nextflow.fusion.FusionEnvProvider.groovy

nextflow.fusion.nextflow.fusion.FusionHelper.groovy

nextflow.fusion.nextflow.fusion.FusionScriptLauncher.groovy

nextflow.k8s

nextflow.k8s.nextflow.k8s.K8sConfig.groovy

nextflow.k8s.nextflow.k8s.K8sDriverLauncher.groovy

nextflow.k8s.nextflow.k8s.K8sExecutor.groovy

nextflow.k8s.nextflow.k8s.K8sTaskHandler.groovy

nextflow.k8s.nextflow.k8s.K8sWrapperBuilder.groovy

nextflow.k8s.client

nextflow.k8s.client.nextflow.k8s.client.ClientConfig.groovy

nextflow.k8s.client.nextflow.k8s.client.ConfigDiscovery.groovy

nextflow.k8s.client.nextflow.k8s.client.K8sClient.groovy

nextflow.k8s.client.nextflow.k8s.client.K8sResponseApi.groovy

nextflow.k8s.client.nextflow.k8s.client.K8sResponseException.groovy

nextflow.k8s.client.nextflow.k8s.client.K8sResponseJson.groovy

nextflow.k8s.client.nextflow.k8s.client.PodUnschedulableException.groovy

nextflow.k8s.client.nextflow.k8s.client.SSLUtils

nextflow.k8s.model

nextflow.k8s.model.nextflow.k8s.model.PodEnv.groovy

nextflow.k8s.model.nextflow.k8s.model.PodHostMount.groovy

nextflow.k8s.model.nextflow.k8s.model.PodMountConfig.groovy

nextflow.k8s.model.nextflow.k8s.model.PodMountCsiEphemeral.groovy

nextflow.k8s.model.nextflow.k8s.model.PodMountEmptyDir.groovy

nextflow.k8s.model.nextflow.k8s.model.PodMountSecret.groovy

nextflow.k8s.model.nextflow.k8s.model.PodNodeSelector.groovy

nextflow.k8s.model.nextflow.k8s.model.PodOptions.groovy

nextflow.k8s.model.nextflow.k8s.model.PodSecurityContext.groovy

nextflow.k8s.model.nextflow.k8s.model.PodSpecBuilder.groovy

nextflow.k8s.model.nextflow.k8s.model.PodVolumeClaim.groovy

nextflow.k8s.model.nextflow.k8s.model.ResourceType.groovy

nextflow.mail

nextflow.mail.nextflow.mail.Attachment.groovy

nextflow.mail.nextflow.mail.BaseMailProvider.groovy

nextflow.mail.nextflow.mail.JavaMailProvider.groovy

nextflow.mail.nextflow.mail.Mail.groovy

nextflow.mail.nextflow.mail.MailProvider.groovy

nextflow.mail.nextflow.mail.Mailer.groovy

nextflow.mail.nextflow.mail.SendMailProvider.groovy

nextflow.mail.nextflow.mail.SimpleMailProvider.groovy

nextflow.mail.nextflow.mail.nextflow-logo-v2-min.png

nextflow.mail.nextflow.mail.notification.html

nextflow.mail.nextflow.mail.notification.txt

nextflow.plugin.extension

nextflow.plugin.extension.nextflow.plugin.extension.ChannelFactoryInstance.groovy

nextflow.plugin.extension.nextflow.plugin.extension.Factory.groovy

nextflow.plugin.extension.nextflow.plugin.extension.Function.groovy

nextflow.plugin.extension.nextflow.plugin.extension.Operator.groovy

nextflow.plugin.extension.nextflow.plugin.extension.PluginExtensionMethod.groovy

nextflow.plugin.extension.nextflow.plugin.extension.PluginExtensionPoint.groovy

nextflow.plugin.extension.nextflow.plugin.extension.PluginExtensionProvider.groovy

nextflow.processor

nextflow.processor.nextflow.processor.Architecture.groovy

nextflow.processor.nextflow.processor.BatchContext.groovy

nextflow.processor.nextflow.processor.BatchHandler.groovy

nextflow.processor.nextflow.processor.ErrorStrategy.groovy

nextflow.processor.nextflow.processor.ForwardClosure.groovy

nextflow.processor.nextflow.processor.InvokeTaskAdapter.groovy

nextflow.processor.nextflow.processor.LocalPollingMonitor.groovy

nextflow.processor.nextflow.processor.ParallelPollingMonitor.groovy

nextflow.processor.nextflow.processor.PublishDir.groovy

nextflow.processor.nextflow.processor.PublishRetryConfig.groovy

nextflow.processor.nextflow.processor.StateObj.groovy

nextflow.processor.nextflow.processor.TaskArrayCollector.groovy

nextflow.processor.nextflow.processor.TaskArrayRun.groovy

nextflow.processor.nextflow.processor.TaskBean.groovy

nextflow.processor.nextflow.processor.TaskConfig.groovy

nextflow.processor.nextflow.processor.TaskContext.groovy

nextflow.processor.nextflow.processor.TaskEntry.groovy

nextflow.processor.nextflow.processor.TaskFault.groovy

nextflow.processor.nextflow.processor.TaskHandler.groovy

nextflow.processor.nextflow.processor.TaskId.groovy

nextflow.processor.nextflow.processor.TaskMonitor.groovy

nextflow.processor.nextflow.processor.TaskPath.groovy

nextflow.processor.nextflow.processor.TaskPollingMonitor.groovy

nextflow.processor.nextflow.processor.TaskProcessor.groovy

nextflow.processor.nextflow.processor.TaskRun.groovy

nextflow.processor.nextflow.processor.TaskStartParams.groovy

nextflow.processor.nextflow.processor.TaskStatus.groovy

nextflow.processor.nextflow.processor.TaskTemplateEngine.groovy

nextflow.processor.tip

nextflow.processor.tip.nextflow.processor.tip.DefaultTaskTipProvider.groovy

nextflow.processor.tip.nextflow.processor.tip.TaskTipProvider.groovy

nextflow.scm

nextflow.scm.nextflow.scm.AssetManager.groovy

nextflow.scm.nextflow.scm.AzureRepositoryProvider.groovy

nextflow.scm.nextflow.scm.BitbucketRepositoryProvider.groovy

nextflow.scm.nextflow.scm.BitbucketServerRepositoryProvider.groovy

nextflow.scm.nextflow.scm.GitUrl.groovy

nextflow.scm.nextflow.scm.GiteaRepositoryProvider.groovy

nextflow.scm.nextflow.scm.GithubRepositoryProvider.groovy

nextflow.scm.nextflow.scm.GitlabRepositoryProvider.groovy

nextflow.scm.nextflow.scm.LocalRepositoryProvider.groovy

nextflow.scm.nextflow.scm.ProviderConfig.groovy

nextflow.scm.nextflow.scm.ProviderPath.groovy

nextflow.scm.nextflow.scm.RepositoryFactory.groovy

nextflow.scm.nextflow.scm.RepositoryProvider.groovy

nextflow.script

nextflow.script.nextflow.script.BaseScript.groovy

nextflow.script.nextflow.script.BaseScriptConsts.groovy

nextflow.script.nextflow.script.BindableDef.groovy

nextflow.script.nextflow.script.BodyDef.groovy

nextflow.script.nextflow.script.ChainableDef.groovy

nextflow.script.nextflow.script.ChannelOut.groovy

nextflow.script.nextflow.script.ComponentDef.groovy

nextflow.script.nextflow.script.CompositeDef.groovy

nextflow.script.nextflow.script.ExecutionContext.groovy

nextflow.script.nextflow.script.ExecutionStack.groovy

nextflow.script.nextflow.script.FunctionDef.groovy

nextflow.script.nextflow.script.FusionMetadata.groovy

nextflow.script.nextflow.script.IncludeDef.groovy

nextflow.script.nextflow.script.IterableDef.groovy

nextflow.script.nextflow.script.OutputDef.groovy

nextflow.script.nextflow.script.OutputDsl.groovy

nextflow.script.nextflow.script.ProcessConfig.groovy

nextflow.script.nextflow.script.ProcessDef.groovy

nextflow.script.nextflow.script.ProcessFactory.groovy

nextflow.script.nextflow.script.ScriptBinding.groovy

nextflow.script.nextflow.script.ScriptFile.groovy

nextflow.script.nextflow.script.ScriptMeta.groovy

nextflow.script.nextflow.script.ScriptParser.groovy

nextflow.script.nextflow.script.ScriptRunner.groovy

nextflow.script.nextflow.script.ScriptTokens.groovy

nextflow.script.nextflow.script.ScriptType.groovy

nextflow.script.nextflow.script.TaskClosure

nextflow.script.nextflow.script.WaveMetadata.groovy

nextflow.script.nextflow.script.WorkflowBinding.groovy

nextflow.script.nextflow.script.WorkflowDef.groovy

nextflow.script.nextflow.script.WorkflowMetadata.groovy

nextflow.script.nextflow.script.WorkflowNotifier.groovy

nextflow.script.bundle

nextflow.script.bundle.nextflow.script.bundle.ResourcesBundle.groovy

nextflow.script.params

nextflow.script.params.nextflow.script.params.ArityParam.groovy

nextflow.script.params.nextflow.script.params.BaseInParam.groovy

nextflow.script.params.nextflow.script.params.BaseOutParam.groovy

nextflow.script.params.nextflow.script.params.BaseParam.groovy

nextflow.script.params.nextflow.script.params.CmdEvalParam.groovy

nextflow.script.params.nextflow.script.params.DefaultInParam.groovy

nextflow.script.params.nextflow.script.params.DefaultOutParam.groovy

nextflow.script.params.nextflow.script.params.EachInParam.groovy

nextflow.script.params.nextflow.script.params.EnvInParam.groovy

nextflow.script.params.nextflow.script.params.EnvOutParam.groovy

nextflow.script.params.nextflow.script.params.FileInParam.groovy

nextflow.script.params.nextflow.script.params.FileOutParam.groovy

nextflow.script.params.nextflow.script.params.InParam.groovy

nextflow.script.params.nextflow.script.params.InputsList.groovy

nextflow.script.params.nextflow.script.params.MissingParam.groovy

nextflow.script.params.nextflow.script.params.OptionalParam.groovy

nextflow.script.params.nextflow.script.params.OutParam.groovy

nextflow.script.params.nextflow.script.params.OutputsList.groovy

nextflow.script.params.nextflow.script.params.PathQualifier.groovy

nextflow.script.params.nextflow.script.params.StdInParam.groovy

nextflow.script.params.nextflow.script.params.StdOutParam.groovy

nextflow.script.params.nextflow.script.params.TupleInParam.groovy

nextflow.script.params.nextflow.script.params.TupleOutParam.groovy

nextflow.script.params.nextflow.script.params.ValueInParam.groovy

nextflow.script.params.nextflow.script.params.ValueOutParam.groovy

nextflow.secret

nextflow.secret.nextflow.secret.LocalSecretsProvider.groovy

nextflow.secret.nextflow.secret.MissingSecretException.groovy

nextflow.secret.nextflow.secret.NullProvider.groovy

nextflow.secret.nextflow.secret.Secret.groovy

nextflow.secret.nextflow.secret.SecretImpl.groovy

nextflow.secret.nextflow.secret.SecretsHelper.groovy

nextflow.secret.nextflow.secret.SecretsLoader.groovy

nextflow.secret.nextflow.secret.SecretsProvider.groovy

nextflow.sort

nextflow.sort.nextflow.sort.BigSort

nextflow.sort.nextflow.sort.LevelDbSort

nextflow.spack

nextflow.spack.nextflow.spack.SpackCache.groovy

nextflow.spack.nextflow.spack.SpackConfig.groovy

nextflow.splitter

nextflow.splitter.nextflow.splitter.AbstractBinarySplitter.groovy

nextflow.splitter.nextflow.splitter.AbstractSplitter.groovy

nextflow.splitter.nextflow.splitter.AbstractTextSplitter.groovy

nextflow.splitter.nextflow.splitter.BytesSplitter.groovy

nextflow.splitter.nextflow.splitter.CacheableCollector.groovy

nextflow.splitter.nextflow.splitter.CharSequenceCollector.groovy

nextflow.splitter.nextflow.splitter.CollectorStrategy.groovy

nextflow.splitter.nextflow.splitter.CsvSplitter.groovy

nextflow.splitter.nextflow.splitter.EntryCounter.groovy

nextflow.splitter.nextflow.splitter.FastaSplitter.groovy

nextflow.splitter.nextflow.splitter.FastqSplitter.groovy

nextflow.splitter.nextflow.splitter.HeaderCollector.groovy

nextflow.splitter.nextflow.splitter.JsonSplitter.groovy

nextflow.splitter.nextflow.splitter.ObjectListCollector.groovy

nextflow.splitter.nextflow.splitter.SplitterEx.groovy

nextflow.splitter.nextflow.splitter.SplitterFactory.groovy

nextflow.splitter.nextflow.splitter.SplitterStrategy.groovy

nextflow.splitter.nextflow.splitter.StringSplitter.groovy

nextflow.splitter.nextflow.splitter.TextFileCollector.groovy

nextflow.splitter.nextflow.splitter.TextSplitter.groovy

nextflow.trace

nextflow.trace.nextflow.trace.AnsiLogObserver.groovy

nextflow.trace.nextflow.trace.DefaultObserverFactory.groovy

nextflow.trace.nextflow.trace.GraphObserver.groovy

nextflow.trace.nextflow.trace.ProgressRecord.groovy

nextflow.trace.nextflow.trace.ProgressState.groovy

nextflow.trace.nextflow.trace.ReportObserver.groovy

nextflow.trace.nextflow.trace.ReportSummary.groovy

nextflow.trace.nextflow.trace.ReportTemplate.html

nextflow.trace.nextflow.trace.ResourcesAggregator.groovy

nextflow.trace.nextflow.trace.TimelineObserver.groovy

nextflow.trace.nextflow.trace.TimelineTemplate.html

nextflow.trace.nextflow.trace.TraceFileObserver.groovy

nextflow.trace.nextflow.trace.TraceHelper.groovy

nextflow.trace.nextflow.trace.TraceObserver.groovy

nextflow.trace.nextflow.trace.TraceObserverFactory.groovy

nextflow.trace.nextflow.trace.TraceRecord.groovy

nextflow.trace.nextflow.trace.WorkflowStats.groovy

nextflow.trace.nextflow.trace.WorkflowStatsObserver.groovy

nextflow.trace.assets

nextflow.trace.assets.nextflow.trace.assets.ReportTemplate.js

nextflow.trace.assets.nextflow.trace.assets.TimelineTemplate.js

nextflow.trace.assets.nextflow.trace.assets.bootstrap.min.css

nextflow.trace.assets.nextflow.trace.assets.bootstrap.min.js

nextflow.trace.assets.nextflow.trace.assets.d3-timeline.js

nextflow.trace.assets.nextflow.trace.assets.d3-timeline.min.js

nextflow.trace.assets.nextflow.trace.assets.d3.v3.min.js

nextflow.trace.assets.nextflow.trace.assets.datatables.min.css

nextflow.trace.assets.nextflow.trace.assets.datatables.min.js

nextflow.trace.assets.nextflow.trace.assets.jquery-3.2.1.min.js

nextflow.trace.assets.nextflow.trace.assets.moment.min.js

nextflow.trace.assets.nextflow.trace.assets.plotly.min.js

nextflow.trace.assets.nextflow.trace.assets.popper.min.js

nextflow.util

nextflow.util.nextflow.util.ArrayBag.groovy

nextflow.util.nextflow.util.Barrier.groovy

nextflow.util.nextflow.util.BlankSeparatedList.groovy

nextflow.util.nextflow.util.BlockingBlockingQueue.groovy

nextflow.util.nextflow.util.BlockingThreadExecutorFactory.groovy

nextflow.util.nextflow.util.ClientProxyThrottler.groovy

nextflow.util.nextflow.util.ClusterConfig.groovy

nextflow.util.nextflow.util.ConfigHelper.groovy

nextflow.util.nextflow.util.CsvWriter.groovy

nextflow.util.nextflow.util.CustomPoolFactory.groovy

nextflow.util.nextflow.util.CustomThreadFactory.groovy

nextflow.util.nextflow.util.CustomThreadPool

nextflow.util.nextflow.util.HexIdentity.groovy

nextflow.util.nextflow.util.HistoryFile.groovy

nextflow.util.nextflow.util.LockManager.groovy

nextflow.util.nextflow.util.LoggerHelper.groovy

nextflow.util.nextflow.util.MustacheTemplateEngine.groovy

nextflow.util.nextflow.util.NameGenerator.groovy

nextflow.util.nextflow.util.PathEscapeAware.groovy

nextflow.util.nextflow.util.PathSplitter.groovy

nextflow.util.nextflow.util.PathTrie.groovy

nextflow.util.nextflow.util.ProxyConfig.groovy

nextflow.util.nextflow.util.RemoteSession.groovy

nextflow.util.nextflow.util.SecretHelper.groovy

nextflow.util.nextflow.util.SerializationHelper.groovy

nextflow.util.nextflow.util.ServiceName.groovy

nextflow.util.nextflow.util.SimpleAgent.groovy

nextflow.util.nextflow.util.SimpleHttpClient.groovy

nextflow.util.nextflow.util.SpuriousDeps.groovy

nextflow.util.nextflow.util.ThreadPoolBuilder.groovy

nextflow.util.nextflow.util.ThreadPoolHelper.groovy

nextflow.util.nextflow.util.ThreadPoolManager.groovy

nextflow.util.nextflow.util.ThrottlingExecutor.groovy

nextflow.util.nextflow.util.Trie.groovy

nextflow.util.nextflow.util.TupleHelper.groovy

nextflow.util.nextflow.util.VirtualThreadPool.groovy

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