nextflow.executor.modules-env.txt Maven / Gradle / Ivy
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A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner
##
## Copyright 2013-2024, Seqera Labs
##
## Licensed under the Apache License, Version 2.0 (the "License");
## you may not use this file except in compliance with the License.
## You may obtain a copy of the License at
##
## http://www.apache.org/licenses/LICENSE-2.0
##
## Unless required by applicable law or agreed to in writing, software
## distributed under the License is distributed on an "AS IS" BASIS,
## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
## See the License for the specific language governing permissions and
## limitations under the License.
##
nxf_module_load(){
local mod=$1
local ver=${2:-}
local new_module="$mod"; [[ $ver ]] && new_module+="/$ver"
if [[ ! $(module list 2>&1 | grep -o "$new_module") ]]; then
old_module=$(module list 2>&1 | grep -Eow "$mod\/[^\( \n]+" || true)
if [[ $ver && $old_module ]]; then
module switch $old_module $new_module
else
module load $new_module
fi
fi
}
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