eqtlmappingpipeline.binarymeta.meta.cis.CalcThread Maven / Gradle / Ivy

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package eqtlmappingpipeline.binarymeta.meta.cis;

import java.util.HashMap;
import java.util.concurrent.ArrayBlockingQueue;
import java.util.logging.Level;
import java.util.logging.Logger;
import umcg.genetica.containers.Pair;

/**
 *
 * @author harmjan
 */
public class CalcThread extends Thread {

    private final ArrayBlockingQueue input;
    private final ArrayBlockingQueue>> output;
    private boolean poisoned;

    public CalcThread(ArrayBlockingQueue input, ArrayBlockingQueue>> output) {
        this.input = input;
        this.output = output;
    }

    @Override
    public void run() {

        while (!poisoned) {
            try {
                BinaryUnzipTask task = input.take();
                if (task.isPoison()) {
                    poisoned = true;
                } else {
                    Pair> result = task.call();
                    output.offer(result);
                }
            } catch (InterruptedException ex) {
                Logger.getLogger(CalcThread.class.getName()).log(Level.SEVERE, null, ex);
            } catch (Exception ex) {
                Logger.getLogger(CalcThread.class.getName()).log(Level.SEVERE, null, ex);
            }

        }
    }
}