All Downloads are FREE. Search and download functionalities are using the official Maven repository.
  • Log In
  • Register
    • Search JAR files by class name

    Download eqtl-mapping-pipeline JAR 1.3.5 with all dependencies


    Files of the artifact eqtl-mapping-pipeline version 1.3.5 from the group nl.systemsgenetics.

    Artifact eqtl-mapping-pipeline
    Group nl.systemsgenetics
    Version 1.3.5


    Please rate this JAR file. Is it a good library?

    1 downloads

    Source code of eqtl-mapping-pipeline version 1.3.5

    META-INF
    META-INF.META-INF.MANIFEST.MF
    eqtlmappingpipeline
    eqtlmappingpipeline.eqtlmappingpipeline.Main
    eqtlmappingpipeline.ase
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AnnotateAseWithSnpEffVcf
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.Ase
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseCalculator
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseConfiguration
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseException
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseMle
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseMleBeta
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseMleNegative
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseRecalculate
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseResults
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseVariant
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseVariantAppendable
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseVariantBean
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.AseVariantRecalculate
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.CompareAseFiles
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.CompareAseToEqtl
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.FindMatchingSnps
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.MultipleTestingCorrectionMethod
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.NewMain
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.ReadCountsLoader
    eqtlmappingpipeline.ase.eqtlmappingpipeline.ase.SnpEffAnnotationMap
    eqtlmappingpipeline.binaryInteraction
    eqtlmappingpipeline.binaryInteraction.eqtlmappingpipeline.binaryInteraction.BinaryInteractionMetaAnalysis
    eqtlmappingpipeline.binaryInteraction.eqtlmappingpipeline.binaryInteraction.ConvertTextOutputToBinary
    eqtlmappingpipeline.binaryInteraction.eqtlmappingpipeline.binaryInteraction.CovariateImportance
    eqtlmappingpipeline.binaryInteraction.eqtlmappingpipeline.binaryInteraction.InvestigateCovariate
    eqtlmappingpipeline.binaryInteraction.eqtlmappingpipeline.binaryInteraction.QueryBinaryInteraction
    eqtlmappingpipeline.binaryInteraction.eqtlmappingpipeline.binaryInteraction.ReplicateInteractions
    eqtlmappingpipeline.binarymeta
    eqtlmappingpipeline.binarymeta.eqtlmappingpipeline.binarymeta.Main
    eqtlmappingpipeline.binarymeta.meta
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.IndividualAnalysis
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.MetaAnalysisCalculationThread
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.MetaAnalysisLoaderThread
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.MetaAnalysisPlotThread
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.MetaAnalysisResultThread
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.MetaAnalysisWorkPackage
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.MetaAnalyze
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.MetaSettings
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.PValueThreshold
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.Reader
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.Result
    eqtlmappingpipeline.binarymeta.meta.eqtlmappingpipeline.binarymeta.meta.ZScoreComparison
    eqtlmappingpipeline.binarymeta.meta.cis
    eqtlmappingpipeline.binarymeta.meta.cis.eqtlmappingpipeline.binarymeta.meta.cis.BinaryUnzipTask
    eqtlmappingpipeline.binarymeta.meta.cis.eqtlmappingpipeline.binarymeta.meta.cis.CalcThread
    eqtlmappingpipeline.binarymeta.meta.cis.eqtlmappingpipeline.binarymeta.meta.cis.CisAnalysis
    eqtlmappingpipeline.binarymeta.meta.cis.eqtlmappingpipeline.binarymeta.meta.cis.CisBinaryConverter
    eqtlmappingpipeline.binarymeta.meta.cis.eqtlmappingpipeline.binarymeta.meta.cis.ResultProcessor
    eqtlmappingpipeline.binarymeta.meta.cis.eqtlmappingpipeline.binarymeta.meta.cis.UnzipTask
    eqtlmappingpipeline.binarymeta.meta.cis.eqtlmappingpipeline.binarymeta.meta.cis.ZScoreLoaderTask
    eqtlmappingpipeline.binarymeta.meta.graphics
    eqtlmappingpipeline.binarymeta.meta.graphics.eqtlmappingpipeline.binarymeta.meta.graphics.MultiVenn
    eqtlmappingpipeline.binarymeta.meta.graphics.eqtlmappingpipeline.binarymeta.meta.graphics.PlotPackage
    eqtlmappingpipeline.binarymeta.meta.graphics.eqtlmappingpipeline.binarymeta.meta.graphics.ZScorePlot
    eqtlmappingpipeline.binarymeta.meta.graphics.eqtlmappingpipeline.binarymeta.meta.graphics.ZScorePlotThread
    eqtlmappingpipeline.binarymeta.util
    eqtlmappingpipeline.binarymeta.util.eqtlmappingpipeline.binarymeta.util.Filter
    eqtlmappingpipeline.binarymeta.util.eqtlmappingpipeline.binarymeta.util.SNPAlleleCheck
    eqtlmappingpipeline.causalinference
    eqtlmappingpipeline.causalinference.eqtlmappingpipeline.causalinference.IVAnalysis
    eqtlmappingpipeline.causalinference.eqtlmappingpipeline.causalinference.IVConsoleGUI
    eqtlmappingpipeline.causalinference.eqtlmappingpipeline.causalinference.Mediation
    eqtlmappingpipeline.chromosomeyexpressionplotter
    eqtlmappingpipeline.chromosomeyexpressionplotter.eqtlmappingpipeline.chromosomeyexpressionplotter.ChrYExpressionPlotConsoleGUI
    eqtlmappingpipeline.chromosomeyexpressionplotter.eqtlmappingpipeline.chromosomeyexpressionplotter.ChromosomeYExpressionPlot
    eqtlmappingpipeline.chromosomeyexpressionplotter.eqtlmappingpipeline.chromosomeyexpressionplotter.ChromosomeYExpressionPlotter
    eqtlmappingpipeline.conditionalanalysis
    eqtlmappingpipeline.conditionalanalysis.eqtlmappingpipeline.conditionalanalysis.ConditionalAnalysis
    eqtlmappingpipeline.conditionalanalysis.eqtlmappingpipeline.conditionalanalysis.ConditionalAnalysisConsoleGUI
    eqtlmappingpipeline.conditionalanalysis.eqtlmappingpipeline.conditionalanalysis.IterativeConditionalAnalysis
    eqtlmappingpipeline.eQTLFoldChangeCalculator
    eqtlmappingpipeline.eQTLFoldChangeCalculator.eqtlmappingpipeline.eQTLFoldChangeCalculator.QTLFoldChangeCalculator
    eqtlmappingpipeline.eQTLFoldChangeCalculator.eqtlmappingpipeline.eQTLFoldChangeCalculator.QTLFoldChangeCalculatorGUI
    eqtlmappingpipeline.graphics
    eqtlmappingpipeline.graphics.eqtlmappingpipeline.graphics.Graphics
    eqtlmappingpipeline.graphics.eqtlmappingpipeline.graphics.ScatterPlot
    eqtlmappingpipeline.graphics.curve
    eqtlmappingpipeline.graphics.curve.eqtlmappingpipeline.graphics.curve.Curve
    eqtlmappingpipeline.graphics.curve.eqtlmappingpipeline.graphics.curve.ROCCurve
    eqtlmappingpipeline.graphics.histogram
    eqtlmappingpipeline.graphics.histogram.eqtlmappingpipeline.graphics.histogram.FrequencyDistributionHistogram
    eqtlmappingpipeline.graphics.histogram.eqtlmappingpipeline.graphics.histogram.Histogram
    eqtlmappingpipeline.graphics.histogram.eqtlmappingpipeline.graphics.histogram.MultiDistrubutionHistogram
    eqtlmappingpipeline.graphics.histogram.eqtlmappingpipeline.graphics.histogram.MultiFrequencyDistributionHistogram
    eqtlmappingpipeline.graphics.map
    eqtlmappingpipeline.graphics.map.eqtlmappingpipeline.graphics.map.Heatmap
    eqtlmappingpipeline.graphics.map.eqtlmappingpipeline.graphics.map.MixupMapperHeatMap
    eqtlmappingpipeline.gui
    eqtlmappingpipeline.gui.eqtlmappingpipeline.gui.EQTLMappingPipelineConsole
    eqtlmappingpipeline.interactionanalysis
    eqtlmappingpipeline.interactionanalysis.eqtlmappingpipeline.interactionanalysis.InteractionAnalysisConsoleGUI
    eqtlmappingpipeline.interactionanalysis.eqtlmappingpipeline.interactionanalysis.InteractionAnalysisDetermineDirection
    eqtlmappingpipeline.interactionanalysis.eqtlmappingpipeline.interactionanalysis.InteractionAnalysisMultiThreaded
    eqtlmappingpipeline.interactionanalysis.eqtlmappingpipeline.interactionanalysis.InteractionAnalysisResults
    eqtlmappingpipeline.interactionanalysis.eqtlmappingpipeline.interactionanalysis.InteractionAnalysisTask
    eqtlmappingpipeline.interactionanalysis.eqtlmappingpipeline.interactionanalysis.InteractionPlotter
    eqtlmappingpipeline.metaqtl3
    eqtlmappingpipeline.metaqtl3.eqtlmappingpipeline.metaqtl3.CalculationThread
    eqtlmappingpipeline.metaqtl3.eqtlmappingpipeline.metaqtl3.EQTLRegression
    eqtlmappingpipeline.metaqtl3.eqtlmappingpipeline.metaqtl3.FDR
    eqtlmappingpipeline.metaqtl3.eqtlmappingpipeline.metaqtl3.MetaQTL3
    eqtlmappingpipeline.metaqtl3.eqtlmappingpipeline.metaqtl3.MetaQTL3ConsoleGUI
    eqtlmappingpipeline.metaqtl3.eqtlmappingpipeline.metaqtl3.ResultProcessorThread
    eqtlmappingpipeline.metaqtl3.eqtlmappingpipeline.metaqtl3.WorkPackageProducer
    eqtlmappingpipeline.metaqtl3.containers
    eqtlmappingpipeline.metaqtl3.containers.eqtlmappingpipeline.metaqtl3.containers.QTL
    eqtlmappingpipeline.metaqtl3.containers.eqtlmappingpipeline.metaqtl3.containers.QTLResultContainer
    eqtlmappingpipeline.metaqtl3.containers.eqtlmappingpipeline.metaqtl3.containers.Result
    eqtlmappingpipeline.metaqtl3.containers.eqtlmappingpipeline.metaqtl3.containers.Settings
    eqtlmappingpipeline.metaqtl3.containers.eqtlmappingpipeline.metaqtl3.containers.TextResult
    eqtlmappingpipeline.metaqtl3.containers.eqtlmappingpipeline.metaqtl3.containers.WorkPackage
    eqtlmappingpipeline.metaqtl3.graphics
    eqtlmappingpipeline.metaqtl3.graphics.eqtlmappingpipeline.metaqtl3.graphics.EQTLDotPlot
    eqtlmappingpipeline.metaqtl3.graphics.eqtlmappingpipeline.metaqtl3.graphics.EQTLPlotter
    eqtlmappingpipeline.metaqtl3.graphics.eqtlmappingpipeline.metaqtl3.graphics.QQPlot
    eqtlmappingpipeline.metaqtl4
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4BinaryResultFile
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4ConsoleUI
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4CorrelationTask
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4CorrelationTask2
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4Dataset
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4DatasetSettings
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4ExecutionTask
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4MetaTrait
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4MetaTraitTreeSet
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4QTL
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4Settings
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.MetaQTL4TraitAnnotation
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.SingleDatasetAnalysis
    eqtlmappingpipeline.metaqtl4.eqtlmappingpipeline.metaqtl4.SingleDatasetAnalysisTask
    eqtlmappingpipeline.mixupmapper
    eqtlmappingpipeline.mixupmapper.eqtlmappingpipeline.mixupmapper.MixupMapper
    eqtlmappingpipeline.mixupmapper.eqtlmappingpipeline.mixupmapper.MixupMapperConsoleGUI
    eqtlmappingpipeline.mixupmapper.eqtlmappingpipeline.mixupmapper.MixupMapperVisualization
    eqtlmappingpipeline.mixupmapper.containers
    eqtlmappingpipeline.mixupmapper.containers.eqtlmappingpipeline.mixupmapper.containers.Family
    eqtlmappingpipeline.mixupmapper.containers.eqtlmappingpipeline.mixupmapper.containers.Individual
    eqtlmappingpipeline.mixupmapper.containers.eqtlmappingpipeline.mixupmapper.containers.Matrix
    eqtlmappingpipeline.mixupmapper.containers.eqtlmappingpipeline.mixupmapper.containers.Trio
    eqtlmappingpipeline.mixupmapper.stat
    eqtlmappingpipeline.mixupmapper.stat.eqtlmappingpipeline.mixupmapper.stat.PCA
    eqtlmappingpipeline.mixupmapper.stat.dist
    eqtlmappingpipeline.mixupmapper.stat.dist.eqtlmappingpipeline.mixupmapper.stat.dist.Bin
    eqtlmappingpipeline.mixupmapper.stat.dist.eqtlmappingpipeline.mixupmapper.stat.dist.DiscreteDist
    eqtlmappingpipeline.mixupmapper.stat.dist.eqtlmappingpipeline.mixupmapper.stat.dist.Dist
    eqtlmappingpipeline.normalization
    eqtlmappingpipeline.normalization.eqtlmappingpipeline.normalization.NormalizationConsoleGUI
    eqtlmappingpipeline.normalization.eqtlmappingpipeline.normalization.Normalizer
    eqtlmappingpipeline.pcaoptimum
    eqtlmappingpipeline.pcaoptimum.eqtlmappingpipeline.pcaoptimum.PCAOptimum
    eqtlmappingpipeline.pcaoptimum.eqtlmappingpipeline.pcaoptimum.PCAOptimumConsoleGUI
    eqtlmappingpipeline.pcaoptimum.eqtlmappingpipeline.pcaoptimum.PCAOptimumInventorize
    eqtlmappingpipeline.pcaoptimum.eqtlmappingpipeline.pcaoptimum.PCAOptimumPlot
    eqtlmappingpipeline.qcpca
    eqtlmappingpipeline.qcpca.eqtlmappingpipeline.qcpca.QCPCA
    eqtlmappingpipeline.qcpca.eqtlmappingpipeline.qcpca.QCPCAConsoleGui
    eqtlmappingpipeline.textmeta
    eqtlmappingpipeline.textmeta.eqtlmappingpipeline.textmeta.FixedEffectMetaAnalysis
    eqtlmappingpipeline.textmeta.eqtlmappingpipeline.textmeta.FixedEffectMetaAnalysisTask
    eqtlmappingpipeline.util
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.BinaryResultFileConverter
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.CisEQTLProbeSNPLDCheck
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.ExpressionDataQuery
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.ExpressionFileMerger
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.GenotypeDataMerger
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.GenotypeDataQuery
    eqtlmappingpipeline.util.HiC
    eqtlmappingpipeline.util.HiC.eqtlmappingpipeline.util.HiC.GetStatistics
    eqtlmappingpipeline.util.HiC.eqtlmappingpipeline.util.HiC.HiCQTLAnnotatorBlockbased
    eqtlmappingpipeline.util.HiC.eqtlmappingpipeline.util.HiC.HiCQTLAnnotatorSnpBased
    eqtlmappingpipeline.util.HiC.eqtlmappingpipeline.util.HiC.HiCQTLProbeAnnotatorSnpBased
    eqtlmappingpipeline.util
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.LDCalculator
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.NoLdSnpProbeListCreator
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.ProbeSNPMapper
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.ProbeSpecificFDR
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.QTLAnnotator
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.QTLDotPlotter
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.QTLFileCompare
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.QTLFileSorter
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.QTLLookup
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.QTLmeQTLCompare
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.RegressCisEffectsFromGeneExpressionData
    eqtlmappingpipeline.util.eqtlmappingpipeline.util.UtilConsoleGUI
    org.apache.commons.math3.stat.inference
    org.apache.commons.math3.stat.inference.org.apache.commons.math3.stat.inference.AlternativeHypothesis
    org.apache.commons.math3.stat.inference.org.apache.commons.math3.stat.inference.BinomialTest
    .version.properties




    © 2015 - 2025 Weber Informatics LLC | Privacy Policy