umcg.genetica.io.gwascatalog.GWASPublication Maven / Gradle / Ivy

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/*
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 * and open the template in the editor.
 */
package umcg.genetica.io.gwascatalog;

import java.util.HashMap;
import java.util.HashSet;
import umcg.genetica.containers.Pair;

/**
 *
 * @author harmjan
 */
public class GWASPublication {

    HashSet traits = new HashSet();
    HashSet snps = new HashSet();
    HashSet loci = new HashSet();
    HashMap, Double> assoc = new HashMap, Double>();
    int id;
    String name;

    public void setPValueAssociatedWithTrait(GWASSNP gwasSNPObj, GWASTrait traitObj, Double pval) {
        assoc.put(new Pair(traitObj, gwasSNPObj), pval);
    }

    public Double getPValueAssociatedWithTrait(GWASSNP gwasSNPObj, GWASTrait traitObj) {
        return assoc.get(new Pair(traitObj, gwasSNPObj));
    }
}