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    Download genetica-libraries JAR 1.0.2 with all dependencies


    Files of the artifact genetica-libraries version 1.0.2 from the group nl.systemsgenetics.

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    Download genetica-libraries (1.0.2)
    Artifact genetica-libraries
    Group nl.systemsgenetics
    Version 1.0.2
    Last update 23. September 2014
    Organization not specified
    URL Not specified
    License not specified
    Dependencies amount 16
    Dependencies commons-primitives, Genotype-IO, commons-collections, log4j, commons-configuration, commons-lang, commons-logging, commons-math3, parallelcolt, jsci, gson, itext, jama, ssj, commons-jxpath, trove4j,
    There are maybe transitive dependencies!
    There is a newer version: 1.0.7
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    Source code of genetica-libraries version 1.0.2

    META-INF
    META-INF.META-INF.MANIFEST.MF
    .regulomeDbTestFile.txt
    .regulomeDbTestFile2.txt
    .regulomeDbTestFileEmpty.txt
    umcg.genetica.collections
    umcg.genetica.collections.umcg.genetica.collections.ChrPosMap
    umcg.genetica.collections.intervaltree
    umcg.genetica.collections.intervaltree.umcg.genetica.collections.intervaltree.IntervalTree
    umcg.genetica.collections.intervaltree.umcg.genetica.collections.intervaltree.IntervalTreeNode
    umcg.genetica.collections.intervaltree.umcg.genetica.collections.intervaltree.PerChrIntervalTree
    umcg.genetica.collections.intervaltree.umcg.genetica.collections.intervaltree.Range
    umcg.genetica.collections.intervaltree.umcg.genetica.collections.intervaltree.RangeEndReverseComparator
    umcg.genetica.collections.intervaltree.umcg.genetica.collections.intervaltree.RangeStartComparator
    umcg.genetica.collections.intervaltree.umcg.genetica.collections.intervaltree.StringRange
    umcg.genetica.console
    umcg.genetica.console.umcg.genetica.console.ConsoleGUIElems
    umcg.genetica.console.umcg.genetica.console.ProgressBar
    umcg.genetica.containers
    umcg.genetica.containers.umcg.genetica.containers.Chromosome
    umcg.genetica.containers.umcg.genetica.containers.Exon
    umcg.genetica.containers.umcg.genetica.containers.Gene
    umcg.genetica.containers.umcg.genetica.containers.Pair
    umcg.genetica.containers.umcg.genetica.containers.SortableSNP
    umcg.genetica.containers.umcg.genetica.containers.StringDoubleObject
    umcg.genetica.containers.umcg.genetica.containers.StringIntegerObject
    umcg.genetica.containers.umcg.genetica.containers.Transcript
    umcg.genetica.containers.umcg.genetica.containers.Triple
    umcg.genetica.ensembl
    umcg.genetica.ensembl.umcg.genetica.ensembl.Features
    umcg.genetica.genomicboundaries
    umcg.genetica.genomicboundaries.umcg.genetica.genomicboundaries.GenomicBoundaries
    umcg.genetica.genomicboundaries.umcg.genetica.genomicboundaries.GenomicBoundariesIterator
    umcg.genetica.genomicboundaries.umcg.genetica.genomicboundaries.GenomicBoundariesSimple
    umcg.genetica.genomicboundaries.umcg.genetica.genomicboundaries.GenomicBoundary
    umcg.genetica.graphics
    umcg.genetica.graphics.umcg.genetica.graphics.ForestPlot
    umcg.genetica.graphics.umcg.genetica.graphics.Heatmap
    umcg.genetica.graphics.umcg.genetica.graphics.ScatterPlot
    umcg.genetica.graphics.umcg.genetica.graphics.VennDiagram
    umcg.genetica.graphics.umcg.genetica.graphics.ViolinBoxPlot
    umcg.genetica.gwas
    umcg.genetica.gwas.umcg.genetica.gwas.Dependifier
    umcg.genetica.gwas.umcg.genetica.gwas.Independifier
    umcg.genetica.io
    umcg.genetica.io.umcg.genetica.io.Gpio
    umcg.genetica.io.bedgraph
    umcg.genetica.io.bedgraph.umcg.genetica.io.bedgraph.BedGraphEntry
    umcg.genetica.io.bedgraph.umcg.genetica.io.bedgraph.BedGraphFile
    umcg.genetica.io.bin
    umcg.genetica.io.bin.umcg.genetica.io.bin.BinaryFile
    umcg.genetica.io.bin.umcg.genetica.io.bin.RandomAccessFile
    umcg.genetica.io.concurrent
    umcg.genetica.io.concurrent.umcg.genetica.io.concurrent.DoubleParseTask
    umcg.genetica.io.geofiles
    umcg.genetica.io.geofiles.umcg.genetica.io.geofiles.ParseSoftFile
    umcg.genetica.io.geofiles.umcg.genetica.io.geofiles.ParseTextTable
    umcg.genetica.io.gmt
    umcg.genetica.io.gmt.umcg.genetica.io.gmt.GMTFile
    umcg.genetica.io.gtf
    umcg.genetica.io.gtf.umcg.genetica.io.gtf.GffAttributeFilter
    umcg.genetica.io.gtf.umcg.genetica.io.gtf.GffElement
    umcg.genetica.io.gtf.umcg.genetica.io.gtf.GffElementIterator
    umcg.genetica.io.gtf.umcg.genetica.io.gtf.GffReaderInterface
    umcg.genetica.io.gtf.umcg.genetica.io.gtf.GtfReader
    umcg.genetica.io.gtf.umcg.genetica.io.gtf.TestGffIntervalTree
    umcg.genetica.io.gwascatalog
    umcg.genetica.io.gwascatalog.umcg.genetica.io.gwascatalog.GWASCatalog
    umcg.genetica.io.gwascatalog.umcg.genetica.io.gwascatalog.GWASLocus
    umcg.genetica.io.gwascatalog.umcg.genetica.io.gwascatalog.GWASPublication
    umcg.genetica.io.gwascatalog.umcg.genetica.io.gwascatalog.GWASSNP
    umcg.genetica.io.gwascatalog.umcg.genetica.io.gwascatalog.GWASTrait
    umcg.genetica.io.pileup
    umcg.genetica.io.pileup.umcg.genetica.io.pileup.PileupEntry
    umcg.genetica.io.pileup.umcg.genetica.io.pileup.PileupFile
    umcg.genetica.io.pileup.umcg.genetica.io.pileup.PileupParseException
    umcg.genetica.io.pileup.umcg.genetica.io.pileup.PileupToVcf
    umcg.genetica.io.probemapping
    umcg.genetica.io.probemapping.umcg.genetica.io.probemapping.reading
    umcg.genetica.io.regulomedb
    umcg.genetica.io.regulomedb.umcg.genetica.io.regulomedb.RegulomeDbEntry
    umcg.genetica.io.regulomedb.umcg.genetica.io.regulomedb.RegulomeDbFile
    umcg.genetica.io.regulomedb.umcg.genetica.io.regulomedb.RegulomeDbFiles
    umcg.genetica.io.regulomedb.umcg.genetica.io.regulomedb.RegulomeDbIterator
    umcg.genetica.io.regulomedb.umcg.genetica.io.regulomedb.RegulomeDbSupportingData
    umcg.genetica.io.text
    umcg.genetica.io.text.umcg.genetica.io.text.TextFile
    umcg.genetica.io.text.converters
    umcg.genetica.io.text.converters.umcg.genetica.io.text.converters.NetworkConverter
    umcg.genetica.io.trityper
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.BufferedSNPLoader
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.ConvertDoubleMatrixDataToTriTyper
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.EQTL
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.ProbeAnnotation
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.SNP
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.SNPLoader
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.TriTyperExpressionData
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.TriTyperGeneticalGenomicsDataset
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.TriTyperGeneticalGenomicsDatasetSettings
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.TriTyperGenotypeData
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.TriTyperSNPMappings
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.WGAFileMatrixGenotype
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.WGAFileMatrixImputedDosage
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.WGAFileMatrixRawData
    umcg.genetica.io.trityper.bin
    umcg.genetica.io.trityper.bin.umcg.genetica.io.trityper.bin.BinaryGZipFloatMatrix
    umcg.genetica.io.trityper.bin.umcg.genetica.io.trityper.bin.BinaryResultDataset
    umcg.genetica.io.trityper.bin.umcg.genetica.io.trityper.bin.BinaryResultProbe
    umcg.genetica.io.trityper.bin.umcg.genetica.io.trityper.bin.BinaryResultProbeSummary
    umcg.genetica.io.trityper.bin.umcg.genetica.io.trityper.bin.BinaryResultSNP
    umcg.genetica.io.trityper.bin.umcg.genetica.io.trityper.bin.BinaryResultSNPSummary
    umcg.genetica.io.trityper.converters
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.BeagleImputedToTriTyper
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.FinalReportToTriTyper
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.ImputeImputedToTriTyperV2
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.InversionCallsToTriTyper
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.MachImputedToTriTyper
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.MachImputedTransposedDosageToTriTyper
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.MinimacImputedToTriTyper
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.PedAndMapToTriTyper
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.TriTyperReferenceConcordantPedAndMapExporter
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.TriTyperToDosageConverter
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.TriTyperToMachImputedTransposed
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.TriTyperToPedAndMapConverter
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.TriTyperToPlinkDosage
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.TriTyperToTabSeparated
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.TriTyperToVCF
    umcg.genetica.io.trityper.converters.umcg.genetica.io.trityper.converters.VCFToTriTyper
    umcg.genetica.io.trityper
    umcg.genetica.io.trityper.umcg.genetica.io.trityper.eQTLTextFile
    umcg.genetica.io.trityper.probeannotation
    umcg.genetica.io.trityper.probeannotation.umcg.genetica.io.trityper.probeannotation.ProbeAnnotation
    umcg.genetica.io.trityper.probeannotation.umcg.genetica.io.trityper.probeannotation.ProbeTranslation
    umcg.genetica.io.trityper.util
    umcg.genetica.io.trityper.util.umcg.genetica.io.trityper.util.BaseAnnot
    umcg.genetica.io.trityper.util.umcg.genetica.io.trityper.util.ChrAnnotation
    umcg.genetica.io.trityper.util.umcg.genetica.io.trityper.util.CompareAllelicDirections
    umcg.genetica.io.trityper.util.umcg.genetica.io.trityper.util.DetermineLD
    umcg.genetica.io.trityper.util.umcg.genetica.io.trityper.util.TriTyperConcatDatasets
    umcg.genetica.io.trityper.util.umcg.genetica.io.trityper.util.TriTyperGenotypeDataMerger
    umcg.genetica.io.ucsc
    umcg.genetica.io.ucsc.umcg.genetica.io.ucsc.PeakFile
    umcg.genetica.io.ucsc.umcg.genetica.io.ucsc.UCSCDataObject
    umcg.genetica.io.ucsc.umcg.genetica.io.ucsc.UCSCTrack
    umcg.genetica.io.ucsc.umcg.genetica.io.ucsc.WigFile
    umcg.genetica.legacy
    umcg.genetica.legacy.umcg.genetica.legacy.ExpressionDataset
    umcg.genetica.legacy.umcg.genetica.legacy.ParseSOFTFile
    umcg.genetica.math
    umcg.genetica.math.umcg.genetica.math.Fmath
    umcg.genetica.math.umcg.genetica.math.Goniometry
    umcg.genetica.math.umcg.genetica.math.PCA
    umcg.genetica.math.interpolation
    umcg.genetica.math.interpolation.umcg.genetica.math.interpolation.CubicSpline
    umcg.genetica.math.matrix
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.DoubleMatrixDataset
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.DoubleMatrixDatasetAC
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.DoubleMatrixDatasetRA
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.MatrixHandling
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.MatrixTools
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.MergeDoubleMatrices
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.SymmetricByteDistanceMatrix
    umcg.genetica.math.matrix.umcg.genetica.math.matrix.SymmetricShortDistanceMatrix
    umcg.genetica.math.matrix2
    umcg.genetica.math.matrix2.umcg.genetica.math.matrix2.DoubleMatrixDataset
    umcg.genetica.math.matrix2.umcg.genetica.math.matrix2.MatrixHandling
    umcg.genetica.math.matrix2.umcg.genetica.math.matrix2.MatrixTools
    umcg.genetica.math.matrix2.umcg.genetica.math.matrix2.MergeDoubleMatrices
    umcg.genetica.math.stats
    umcg.genetica.math.stats.umcg.genetica.math.stats.AUC
    umcg.genetica.math.stats.umcg.genetica.math.stats.AndersonDarling
    umcg.genetica.math.stats.umcg.genetica.math.stats.Binning
    umcg.genetica.math.stats.umcg.genetica.math.stats.ChiSquare
    umcg.genetica.math.stats.umcg.genetica.math.stats.Correlation
    umcg.genetica.math.stats.umcg.genetica.math.stats.Descriptives
    umcg.genetica.math.stats.umcg.genetica.math.stats.FDRUtils
    umcg.genetica.math.stats.umcg.genetica.math.stats.FisherExactTest
    umcg.genetica.math.stats.umcg.genetica.math.stats.HWE
    umcg.genetica.math.stats.umcg.genetica.math.stats.Heterogeneity
    umcg.genetica.math.stats.umcg.genetica.math.stats.KolmogorovSmirnov
    umcg.genetica.math.stats.umcg.genetica.math.stats.Log2Transform
    umcg.genetica.math.stats.umcg.genetica.math.stats.Normalization
    umcg.genetica.math.stats.umcg.genetica.math.stats.QValues
    umcg.genetica.math.stats.umcg.genetica.math.stats.QuantileNormalization
    umcg.genetica.math.stats.umcg.genetica.math.stats.Regression
    umcg.genetica.math.stats.umcg.genetica.math.stats.TTest
    umcg.genetica.math.stats.umcg.genetica.math.stats.TheilSen
    umcg.genetica.math.stats.umcg.genetica.math.stats.TwoStepLeastSquares
    umcg.genetica.math.stats.umcg.genetica.math.stats.WilcoxonMannWhitney
    umcg.genetica.math.stats.umcg.genetica.math.stats.ZScores
    umcg.genetica.math.stats.concurrent
    umcg.genetica.math.stats.concurrent.umcg.genetica.math.stats.concurrent.ConcurrentCorrelation
    umcg.genetica.math.stats.concurrent.umcg.genetica.math.stats.concurrent.ConcurrentCorrelationTask
    umcg.genetica.math.stats.concurrent.umcg.genetica.math.stats.concurrent.ConcurrentCovariation
    umcg.genetica.math.stats.concurrent.umcg.genetica.math.stats.concurrent.ConcurrentCovariationTask
    umcg.genetica.methylation
    umcg.genetica.methylation.umcg.genetica.methylation.AssociatingPcasWithAnnotation
    umcg.genetica.methylation.umcg.genetica.methylation.CheckMatrixForValidBetaValues
    umcg.genetica.methylation.umcg.genetica.methylation.ConvertBetaAndMvalues
    umcg.genetica.methylation.umcg.genetica.methylation.ConverteUandMTo
    umcg.genetica.methylation.umcg.genetica.methylation.DeepCopy
    umcg.genetica.methylation.umcg.genetica.methylation.MethylationAssociatoingAnnotationWithValues
    umcg.genetica.methylation.umcg.genetica.methylation.ParseTcgaMethylationFile
    umcg.genetica.methylation.umcg.genetica.methylation.SoftfileAnnotation
    umcg.genetica.ncbi.dbsnp
    umcg.genetica.ncbi.dbsnp.umcg.genetica.ncbi.dbsnp.SNPAnnotation
    umcg.genetica.text
    umcg.genetica.text.umcg.genetica.text.Strings
    umcg.genetica.text.parsing
    umcg.genetica.text.parsing.umcg.genetica.text.parsing.Demographics
    umcg.genetica.util
    umcg.genetica.util.umcg.genetica.util.CheckAssocationMultipleGeneProbes
    umcg.genetica.util.umcg.genetica.util.InplaceArrayQuickSort
    umcg.genetica.util.umcg.genetica.util.Primitives
    umcg.genetica.util.umcg.genetica.util.RankArray
    umcg.genetica.util.umcg.genetica.util.RankDoubleArray
    umcg.genetica.util.umcg.genetica.util.RankIntArray
    umcg.genetica.util.umcg.genetica.util.RunTimer
    umcg.genetica.util.umcg.genetica.util.SmoothSort
    umcg.genetica.util.umcg.genetica.util.StringDoubleObjectSorterSortOnDouble
    umcg.genetica.util.umcg.genetica.util.StringIntegerObjectSorterSortOnInteger
    umcg.genetica.util.umcg.genetica.util.VectorSorter
    umcg.genetica.variantAnnotator
    umcg.genetica.variantAnnotator.umcg.genetica.variantAnnotator.GenomicRange
    umcg.genetica.variantAnnotator.umcg.genetica.variantAnnotator.VariantAnnotator




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