classes.org.forester.archaeopteryx.MainPanel.class Maven / Gradle / Ivy
Go to download
Show more of this group Show more artifacts with this name
Show all versions of forester Show documentation
Show all versions of forester Show documentation
Applications and software libraries for evolutionary biology and comparative genomics research
???? 2? ?
?
4
? ?
?
?
?
?
?
?
?
?
!
"#$
%
&
?'
c(
)*
#+
),
)-.
,/
01
)23
0/
04
0567
5
489
4 ?: ?;
c<
c=
?>
??
4@
)A
?B
cC
?D E
F
?G
H
I ?J
K L
cM N
cO ?P
QR
)S
TU ?V ?W
XY
XZ
?[\
Y,
?]
?^
?R
_`
Ya
?8
bc
?de
cf
c[
cgh
gi
cj k
cl
cm n
?o
?p q rs rt
bu
[
Xv
w
Xx
y
Xz
{| }
~ ? ???
?? InnerClasses serialVersionUID J
ConstantValue???){?
_mainframe &Lorg/forester/archaeopteryx/MainFrame; _treepanels Ljava/util/List; Signature 8Ljava/util/List; _control_panel )Lorg/forester/archaeopteryx/ControlPanel; _treegraphic_scroll_panes +Ljava/util/List; _treegraphic_scroll_pane_panels &Ljava/util/List; _configuration *Lorg/forester/archaeopteryx/Configuration; _tabbed_pane Ljavax/swing/JTabbedPane; _colorset )Lorg/forester/archaeopteryx/TreeColorSet; _fontset (Lorg/forester/archaeopteryx/TreeFontSet; _cut_or_copied_tree "Lorg/forester/phylogeny/Phylogeny; _copied_and_pasted_nodes Ljava/util/Set; $Ljava/util/Set;
_image_map Ljava/util/Hashtable; GLjava/util/Hashtable; _lineage_to_rank_map Ljava/util/Map; 5Ljava/util/Map; ()V Code LineNumberTable S(Lorg/forester/archaeopteryx/Configuration;Lorg/forester/archaeopteryx/MainFrame;)V
StackMapTable??? addPhylogenyInNewTab s(Lorg/forester/phylogeny/Phylogeny;Lorg/forester/archaeopteryx/Configuration;Ljava/lang/String;Ljava/lang/String;)V? addPhylogenyInPanel O(Lorg/forester/phylogeny/Phylogeny;Lorg/forester/archaeopteryx/Configuration;)V adjustJScrollPane closeCurrentPane componentHidden "(Ljava/awt/event/ComponentEvent;)V componentMoved componentResized componentShown getConfiguration ,()Lorg/forester/archaeopteryx/Configuration; getControlPanel +()Lorg/forester/archaeopteryx/ControlPanel; getCopiedAndPastedNodes ()Ljava/util/Set; &()Ljava/util/Set; getCurrentPhylogeny $()Lorg/forester/phylogeny/Phylogeny; getCurrentScrollPane ()Ljavax/swing/JScrollPane; getCurrentScrollPanePanel ()Ljavax/swing/JPanel; getCurrentTabIndex ()I setTitleOfSelectedTab (Ljava/lang/String;)V getCurrentTreePanel (()Lorg/forester/archaeopteryx/TreePanel; getCutOrCopiedTree getMainFrame (()Lorg/forester/archaeopteryx/MainFrame;
getOptions &()Lorg/forester/archaeopteryx/Options; getPhylogeny %(I)Lorg/forester/phylogeny/Phylogeny; getSizeOfViewport ()Ljava/awt/Dimension;
getTabbedPane ()Ljavax/swing/JTabbedPane; getTreeColorSet +()Lorg/forester/archaeopteryx/TreeColorSet; getTreeFontSet *()Lorg/forester/archaeopteryx/TreeFontSet;
getTreePanels ()Ljava/util/List; :()Ljava/util/List;
initialize setArrowCursor setCopiedAndPastedNodes (Ljava/util/Set;)V '(Ljava/util/Set;)V setCutOrCopiedTree %(Lorg/forester/phylogeny/Phylogeny;)V setTreeColorSet ,(Lorg/forester/archaeopteryx/TreeColorSet;)V? setTreeFontSet +(Lorg/forester/archaeopteryx/TreeFontSet;)V setupTreeGraphic V(Lorg/forester/archaeopteryx/Configuration;Lorg/forester/archaeopteryx/ControlPanel;)V
setWaitCursor terminate setImageMap (Ljava/util/Hashtable;)V J(Ljava/util/Hashtable;)V getImageMap ()Ljava/util/Hashtable; I()Ljava/util/Hashtable; getLineageToRankMap ()Ljava/util/Map; 7()Ljava/util/Map;
access$000 R(Lorg/forester/archaeopteryx/MainPanel;)Lorg/forester/archaeopteryx/Configuration;
access$100 A(Lorg/forester/archaeopteryx/MainPanel;)Ljavax/swing/JTabbedPane;
SourceFile MainPanel.java ? ? ? ? ? ? "java/lang/IllegalArgumentException configuration is null ? ? ?? ? ? ? ? java/util/ArrayList ? ? ? ? 'org/forester/archaeopteryx/ControlPanel ?? ? ? West ?? ? ? ? ? ? ? $org/forester/archaeopteryx/TreePanel ?? ?? ??? ??? ??? ?? ??? ?? java/lang/StringBuilder [ ?? ? ? ? ? ?? ] javax/swing/JScrollPane ?? ?? &org/forester/archaeopteryx/MainPanel$1 ??? ?? ?? &org/forester/archaeopteryx/MainPanel$2 ?? ?? javax/swing/JPanel java/awt/BorderLayout ?? Center ? ? ? ? ?? ?? ? ? ? ? ?? ? ? ? ? ?? ? ? ?? ?? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?? ?? ? ?? ? ? ??? ? ? ? ? ? ?? ?? ?? ?? &org/forester/archaeopteryx/TreeFontSet ? ? ? ?? ?? ??? ?? ? ? javax/swing/JTabbedPane ?? ?? &org/forester/archaeopteryx/MainPanel$3 ?? ?? ?? ?? ?? ?? ?? ? ? ??? ?? ?? ?? ? ? ?? ? ? ?? ? ?? ?? ?? ? ? ? ? ? ? java/util/HashMap $org/forester/archaeopteryx/MainPanel java/awt/event/ComponentListener (org/forester/archaeopteryx/Configuration $org/forester/archaeopteryx/MainFrame java/lang/String java/util/Iterator addComponentListener %(Ljava/awt/event/ComponentListener;)V S(Lorg/forester/archaeopteryx/MainPanel;Lorg/forester/archaeopteryx/Configuration;)V add )(Ljava/awt/Component;Ljava/lang/Object;)V showWhole u(Lorg/forester/phylogeny/Phylogeny;Lorg/forester/archaeopteryx/Configuration;Lorg/forester/archaeopteryx/MainPanel;)V phylogenyAdded -(Lorg/forester/archaeopteryx/Configuration;)V setControlPanel ,(Lorg/forester/archaeopteryx/ControlPanel;)V java/util/List (Ljava/lang/Object;)Z org/forester/phylogeny/Phylogeny getName ()Ljava/lang/String; org/forester/util/ForesterUtil isEmpty (Ljava/lang/String;)Z
getIdentifier *()Lorg/forester/phylogeny/data/Identifier; &org/forester/phylogeny/data/Identifier toString append -(Ljava/lang/String;)Ljava/lang/StringBuilder; getTabCount (I)Ljava/lang/StringBuilder; (Ljava/awt/Component;)V getHorizontalScrollBar ()Ljavax/swing/JScrollBar; O(Lorg/forester/archaeopteryx/MainPanel;Lorg/forester/archaeopteryx/TreePanel;)V javax/swing/JScrollBar addAdjustmentListener &(Ljava/awt/event/AdjustmentListener;)V getVerticalScrollBar setUnitIncrement (I)V setBlockIncrement setLayout (Ljava/awt/LayoutManager;)V addTab M(Ljava/lang/String;Ljavax/swing/Icon;Ljava/awt/Component;Ljava/lang/String;)V setSelectedIndex remove
revalidate (I)Ljava/lang/Object; phylogenyRemoved updateOvSettings
updateOvSizes size getSelectedIndex get
setTitleAt (ILjava/lang/String;)V getViewport ()Ljavax/swing/JViewport; javax/swing/JViewport
getExtentSize
isUseNativeUI ()Z getGuiBackgroundColor ()Ljava/awt/Color;
setBackground (Ljava/awt/Color;)V "org/forester/archaeopteryx/Options getBaseFont ()Ljava/awt/Font; setBaseFont (Ljava/awt/Font;)V 'org/forester/archaeopteryx/TreeColorSet createInstance U(Lorg/forester/archaeopteryx/Configuration;)Lorg/forester/archaeopteryx/TreeColorSet;
setForeground )(Lorg/forester/archaeopteryx/MainPanel;)V addChangeListener %(Ljavax/swing/event/ChangeListener;)V jcb_font Ljava/awt/Font; setFont setTabLayoutPolicy ARROW_CURSOR Ljava/awt/Cursor; setCursor (Ljava/awt/Cursor;)V repaint iterator ()Ljava/util/Iterator; hasNext next ()Ljava/lang/Object; getBackgroundColor getSpeciesColors setSpeciesColors (Ljava/util/Map;)V getAnnotationColors setAnnotationColors getDomainColors Forg/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture setColorMap WAIT_CURSOR removeAllEditNodeJFrames ! ? 4 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? * ? ? ? ! *? ? ?
I J ? ? ? ? X*? +?
? Y? ?**? *+? *,? *?
Y? ? *?
*? Y*+? ? **? ? *+*? ? *? ? ? ? 6
L M N P Q R ! S , T 0 U = V G W P X W Y ? ? ? ? ? ? ? ? ? 7? Y+,*? :*? ,? *? ? *? ? W:+? ? ? +? :? E+? ? +? ? :? 2-? ? -:? %? Y? !"? #*? $? %`? &'? #? (:? )Y? *:? +? ,Y*? -? .? /? 0Y*? 1? .? +
? 2? + ȶ 3? /
? 2? / ȶ 3? 4Y? :? 5Y? 6? 78? 9*? :? W*? ;? W*? $? <*? $*? $? %d? =*? ? ? ? r _ ` a b ) c - d 7 e @ g G h S j Z k ` n ? p ? q ? z ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?/ ?6 ? ? ? @ ? ? ! ? ? ? ? ?? Y+,*? N*? ,? -*? ? *? -? W? )Y-? *:? +? 2? +2? 3? /? 2? /2? 3? 4Y? :? 5Y? 6? 78? 9*? :? W*? ;? W*8? ? ? B ? ? ? ? & ? 0 ? : ? D ? N ? X ? a ? m ? v ? ? ? ? ? ? ? ? ? ? X '*? $? *? >*? ?? @*? >*? ?8? 9*? ?? A? ? ? ? ? ? & ? ? ? ? ? ? E*? B<? >*? $? %? 4*? $? C*? D? E W*? ;? E W*? :? E W*? ? F? ? " ? ? ? ? & ? 1 ? < ? D ? ? ? D ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? C *? G? *? G? H*? G? I? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? *? ? ? ? ? ? ? *? ? ? ? ? ? ? *? J? ? ? ? ? ? ? ? : *? G? ?*? G? K? ? ? ? ? ? ? ? ? q 6*? ;? L ? +*? $? M<? *? ;? N ? )?*? ;? N ? )?? ? ? ? ? ? & ? 4 ? ? ? &?
? ? ? X (*? $? M<? *? :? N ? 4?*? :? N ? 4? ? ? ? ? ? ? ? ? ? ? @ *? $? M<? ?? ? ? ? ? ? ? ? ? ? F *? $? M= ? *? $ +? O? ? ? ? ? ? ? p 7*? $? M<? *? ? N ? ?*? ? L ? *? ? N ? ?? ?
' 5 ? ? ? ? ? *? P? ? ? ? ? *? ? ? ? ? ? *? ? Q? ? # ? ? ? C *? G? ?*? ? N ? ? K? ? ' ( * ? ? ? ? # *? ?? R? S? ? . ? ? ? *? ? ? 2 ? ? ? *? T? ? 6 ? ? ? *? U? ? : ? ? ? *? ? ? > ? ? ? ? ? , ?*? ? V? **? ? W? X*? YY*? Z? [*? \*? ]? ^? _*? 5Y? 6? `**? ? a? b*?
Y? ? ;*?
Y? ? :*? cY? d? *? ? V? *? *? ? W? e*? *? ? W? f*? ? gY*? h? i*? ? V?
*? ? j? k*? ? l**? 8? ? ? J B
C E !F /G :H EI PJ [K gL qM N ?P ?h ?i ?k ?l ?m ? ? w" ? ? ? , *? m? n*? o? ? p q r ? ? ? " *+? J? ?
u v ? ? ? ? ? " *+? P? ?
y z ? ? ? g .*+? T*? D? p M,? q ? ,? r ? N-+? s? t??? ? } ~ " *? -? ? ? ?? ? ? ? " *+? U? ?
? ? ? ? ? < ,+? u? v,+? w? x+? y? z? ? ? ? ? ? ? ? ? , *? {? n*? o? ? ? ? ? ? ? ? Z %*? ? p L+? q ? +? r ? M,? |??? ? ? ? !? $? ? ?
?? ? ? ? " *+? }? ?
? ? ? ? ? ? ? *? }? ? ? ? ? ) ? ? ? = ? ~?
? Y? ?? ~? ~? ? ? ? ? ? ? ? ? ? ? *? ? ? 8 ? ? *? ? ? 8 ? g 0 , © 2015 - 2025 Weber Informatics LLC | Privacy Policy