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Applications and software libraries for evolutionary biology and comparative genomics research

Files of the artifact forester version 1.005 from the group org.biojava.thirdparty.

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Artifact forester
Group org.biojava.thirdparty
Version 1.005
Last update 27. January 2015
Organization not specified
URL Not specified
License not specified
Dependencies amount 2
Dependencies commons-codec, openchart,
There are maybe transitive dependencies!

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Source code of forester version 1.005

META-INF

META-INF.META-INF.MANIFEST.MF

classes.org.forester.analysis

classes.org.forester.analysis.classes.org.forester.analysis.AncestralTaxonomyInference.class

classes.org.forester.analysis.classes.org.forester.analysis.AncestralTaxonomyInferenceException.class

classes.org.forester.analysis.classes.org.forester.analysis.TaxonomyDataManager$1.class

classes.org.forester.analysis.classes.org.forester.analysis.TaxonomyDataManager$QUERY_TYPE.class

classes.org.forester.analysis.classes.org.forester.analysis.TaxonomyDataManager.class

classes.org.forester.application

classes.org.forester.application.classes.org.forester.application.confadd.class

classes.org.forester.application.classes.org.forester.application.count_support.class

classes.org.forester.application.classes.org.forester.application.decorator.class

classes.org.forester.application.classes.org.forester.application.gene_tree_preprocess.class

classes.org.forester.application.classes.org.forester.application.goac.class

classes.org.forester.application.classes.org.forester.application.gsdi$1.class

classes.org.forester.application.classes.org.forester.application.gsdi$BASE_ALGORITHM.class

classes.org.forester.application.classes.org.forester.application.gsdi.class

classes.org.forester.application.classes.org.forester.application.mcc.class

classes.org.forester.application.classes.org.forester.application.meta_ontologizer.class

classes.org.forester.application.classes.org.forester.application.nhx_too.class

classes.org.forester.application.classes.org.forester.application.nj.class

classes.org.forester.application.classes.org.forester.application.obo_tool.class

classes.org.forester.application.classes.org.forester.application.pccx.class

classes.org.forester.application.classes.org.forester.application.pfam2go_extractor.class

classes.org.forester.application.classes.org.forester.application.pfam_go.class

classes.org.forester.application.classes.org.forester.application.pfamacc2go.class

classes.org.forester.application.classes.org.forester.application.pfamacc2pfamid.class

classes.org.forester.application.classes.org.forester.application.phyloxml_converter.class

classes.org.forester.application.classes.org.forester.application.printAllSpecies.class

classes.org.forester.application.classes.org.forester.application.printSameOrder.class

classes.org.forester.application.classes.org.forester.application.rio.class

classes.org.forester.application.classes.org.forester.application.sdi_dir.class

classes.org.forester.application.classes.org.forester.application.sdi_r.class

classes.org.forester.application.classes.org.forester.application.strip.class

classes.org.forester.application.classes.org.forester.application.support_statistics.class

classes.org.forester.application.classes.org.forester.application.support_transfer.class

classes.org.forester.application.classes.org.forester.application.surf_paup.class

classes.org.forester.application.classes.org.forester.application.surfacing$1.class

classes.org.forester.application.classes.org.forester.application.surfacing.class

classes.org.forester.archaeopteryx

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.AptxUtil$GraphicsExportType.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.AptxUtil.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Archaeopteryx.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ArchaeopteryxA.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ArchaeopteryxE$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ArchaeopteryxE$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ArchaeopteryxE$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ArchaeopteryxE.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ColorSchemeChooser$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ColorSchemeChooser$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ColorSchemeChooser$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ColorSchemeChooser.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Configuration$TRIPLET.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Configuration$UI.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Configuration.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Constants.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ControlPanel$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ControlPanel$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ControlPanel$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ControlPanel$4.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ControlPanel$5.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ControlPanel$NodeClickAction.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.ControlPanel.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.DefaultFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.FontChooser.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.GraphicsFileFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrame$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrame$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrame.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplet$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplet$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplet$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplet.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplication$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplication$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplication$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplication$4.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainFrameApplication.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainPanel$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainPanel$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainPanel$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainPanel.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MainPanelApplets.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MouseListener.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.MsaFileFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NHFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NHXFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NexusFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeEditPanel$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeEditPanel$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeEditPanel$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeEditPanel$PHYLOXML_TAG.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeEditPanel$TagNumber.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeEditPanel.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeFrame$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeFrame$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodeFrame.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.NodePanel.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Options$CLADOGRAM_TYPE.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Options$NODE_LABEL_DIRECTION.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Options$OVERVIEW_PLACEMENT_TYPE.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Options$PHYLOGENY_GRAPHICS_TYPE.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Options.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.PdfExporter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.PdfFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.Printer.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.SequencesFileFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TextFrame$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TextFrame.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TolFilter.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TreeColorSet.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TreeFontSet.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TreePanel$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TreePanel$2.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TreePanel$3.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TreePanel$SubtreeColorizationActionListener.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.TreePanel.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.UrlTreeReader$1.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.UrlTreeReader.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.WebLink.class

classes.org.forester.archaeopteryx.classes.org.forester.archaeopteryx.XMLFilter.class

classes.org.forester.archaeopteryx.phylogeny.data

classes.org.forester.archaeopteryx.phylogeny.data.classes.org.forester.archaeopteryx.phylogeny.data.RenderableDomainArchitecture.class

classes.org.forester.archaeopteryx.phylogeny.data.classes.org.forester.archaeopteryx.phylogeny.data.RenderablePhylogenyData.class

classes.org.forester.archaeopteryx.phylogeny.data.classes.org.forester.archaeopteryx.phylogeny.data.RenderableVector.class

classes.org.forester.archaeopteryx.tools

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.AncestralTaxonomyInferrer.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.Blast.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.GoAnnotation.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.ImageLoader.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.InferenceManager.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.PhyloInferenceDialog$1.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.PhyloInferenceDialog.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.PhylogeneticInferenceOptions.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.PhylogeneticInferrer$1.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.PhylogeneticInferrer.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.ProcessPool.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.ProcessRunning.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.RunnableProcess.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.SequenceDataRetriver$Db.class

classes.org.forester.archaeopteryx.tools.classes.org.forester.archaeopteryx.tools.SequenceDataRetriver.class

classes.org.forester.archaeopteryx.webservices

classes.org.forester.archaeopteryx.webservices.classes.org.forester.archaeopteryx.webservices.BasicPhylogeniesWebserviceClient.class

classes.org.forester.archaeopteryx.webservices.classes.org.forester.archaeopteryx.webservices.PhylogeniesWebserviceClient.class

classes.org.forester.archaeopteryx.webservices.classes.org.forester.archaeopteryx.webservices.WebserviceUtil.class

classes.org.forester.archaeopteryx.webservices.classes.org.forester.archaeopteryx.webservices.WebservicesManager$WsPhylogenyFormat.class

classes.org.forester.archaeopteryx.webservices.classes.org.forester.archaeopteryx.webservices.WebservicesManager.class

classes.org.forester.datastructures

classes.org.forester.datastructures.classes.org.forester.datastructures.Queue.class

classes.org.forester.development

classes.org.forester.development.classes.org.forester.development.AbstractRenderer.class

classes.org.forester.development.classes.org.forester.development.DevelopmentTools.class

classes.org.forester.development.classes.org.forester.development.Hello3d.class

classes.org.forester.development.classes.org.forester.development.HmmerRest.class

classes.org.forester.development.classes.org.forester.development.MsaRenderer$1.class

classes.org.forester.development.classes.org.forester.development.MsaRenderer$2.class

classes.org.forester.development.classes.org.forester.development.MsaRenderer.class

classes.org.forester.development.classes.org.forester.development.RandomThing.class

classes.org.forester.development.classes.org.forester.development.ResidueRenderer.class

classes.org.forester.development.classes.org.forester.development.Test.class

classes.org.forester.development.classes.org.forester.development.Time.class

classes.org.forester.development.classes.org.forester.development.neTest$DoublePointer.class

classes.org.forester.development.classes.org.forester.development.neTest.class

classes.org.forester.evoinference

classes.org.forester.evoinference.classes.org.forester.evoinference.TestPhylogenyReconstruction.class

classes.org.forester.evoinference.distance

classes.org.forester.evoinference.distance.classes.org.forester.evoinference.distance.NeighborJoining.class

classes.org.forester.evoinference.distance.classes.org.forester.evoinference.distance.PairwiseDistanceCalculator$PWD_DISTANCE_METHOD.class

classes.org.forester.evoinference.distance.classes.org.forester.evoinference.distance.PairwiseDistanceCalculator.class

classes.org.forester.evoinference.matrix.character

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.BasicCharacterStateMatrix$1.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.BasicCharacterStateMatrix.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.CharacterStateMatrix$1.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.CharacterStateMatrix$BinaryStates.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.CharacterStateMatrix$Format.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.CharacterStateMatrix$GainLossStates.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.CharacterStateMatrix$NucleotideStates.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.CharacterStateMatrix.class

classes.org.forester.evoinference.matrix.character.classes.org.forester.evoinference.matrix.character.DiscreteState.class

classes.org.forester.evoinference.matrix.distance

classes.org.forester.evoinference.matrix.distance.classes.org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix$1.class

classes.org.forester.evoinference.matrix.distance.classes.org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix.class

classes.org.forester.evoinference.matrix.distance.classes.org.forester.evoinference.matrix.distance.DistanceMatrix$Format.class

classes.org.forester.evoinference.matrix.distance.classes.org.forester.evoinference.matrix.distance.DistanceMatrix.class

classes.org.forester.evoinference.parsimony

classes.org.forester.evoinference.parsimony.classes.org.forester.evoinference.parsimony.DolloParsimony.class

classes.org.forester.evoinference.parsimony.classes.org.forester.evoinference.parsimony.FitchParsimony.class

classes.org.forester.evoinference.parsimony.classes.org.forester.evoinference.parsimony.SankoffParsimony.class

classes.org.forester.evoinference.tools

classes.org.forester.evoinference.tools.classes.org.forester.evoinference.tools.BootstrapResampler.class

classes.org.forester.go

classes.org.forester.go.classes.org.forester.go.BasicGoRelationship$1.class

classes.org.forester.go.classes.org.forester.go.BasicGoRelationship.class

classes.org.forester.go.classes.org.forester.go.BasicGoSubset$1.class

classes.org.forester.go.classes.org.forester.go.BasicGoSubset.class

classes.org.forester.go.classes.org.forester.go.BasicGoTerm.class

classes.org.forester.go.classes.org.forester.go.BasicGoXRef$1.class

classes.org.forester.go.classes.org.forester.go.BasicGoXRef.class

classes.org.forester.go.classes.org.forester.go.GoId.class

classes.org.forester.go.classes.org.forester.go.GoNameSpace$1.class

classes.org.forester.go.classes.org.forester.go.GoNameSpace$GoNamespaceType.class

classes.org.forester.go.classes.org.forester.go.GoNameSpace.class

classes.org.forester.go.classes.org.forester.go.GoRelationship$Type.class

classes.org.forester.go.classes.org.forester.go.GoRelationship.class

classes.org.forester.go.classes.org.forester.go.GoSubset$Type.class

classes.org.forester.go.classes.org.forester.go.GoSubset.class

classes.org.forester.go.classes.org.forester.go.GoTerm.class

classes.org.forester.go.classes.org.forester.go.GoUtils.class

classes.org.forester.go.classes.org.forester.go.GoXRef$Type.class

classes.org.forester.go.classes.org.forester.go.GoXRef.class

classes.org.forester.go.classes.org.forester.go.Mapping.class

classes.org.forester.go.classes.org.forester.go.OBOparser$1.class

classes.org.forester.go.classes.org.forester.go.OBOparser$ReturnType.class

classes.org.forester.go.classes.org.forester.go.OBOparser.class

classes.org.forester.go.classes.org.forester.go.PfamToGoMapping.class

classes.org.forester.go.classes.org.forester.go.PfamToGoParser.class

classes.org.forester.go.classes.org.forester.go.TestGo.class

classes.org.forester.go.etc

classes.org.forester.go.etc.classes.org.forester.go.etc.MetaOntologizer$1.class

classes.org.forester.go.etc.classes.org.forester.go.etc.MetaOntologizer.class

classes.org.forester.go.etc.classes.org.forester.go.etc.OntologizerResult$TYPE.class

classes.org.forester.go.etc.classes.org.forester.go.etc.OntologizerResult.class

classes.org.forester.io.parsers

classes.org.forester.io.parsers.classes.org.forester.io.parsers.FastaParser.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.GeneralMsaParser.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.HmmPfamOutputParser$FilterType.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.HmmPfamOutputParser$ReturnType.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.HmmPfamOutputParser.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.HmmscanPerDomainTableParser$FilterType.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.HmmscanPerDomainTableParser$INDIVIDUAL_SCORE_CUTOFF.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.HmmscanPerDomainTableParser$ReturnType.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.HmmscanPerDomainTableParser.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.PhylogenyParser.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.SymmetricalDistanceMatrixParser$1.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.SymmetricalDistanceMatrixParser$InputMatrixType.class

classes.org.forester.io.parsers.classes.org.forester.io.parsers.SymmetricalDistanceMatrixParser.class

classes.org.forester.io.parsers.nexus

classes.org.forester.io.parsers.nexus.classes.org.forester.io.parsers.nexus.NexusBinaryStatesMatrixParser.class

classes.org.forester.io.parsers.nexus.classes.org.forester.io.parsers.nexus.NexusCharactersParser.class

classes.org.forester.io.parsers.nexus.classes.org.forester.io.parsers.nexus.NexusConstants.class

classes.org.forester.io.parsers.nexus.classes.org.forester.io.parsers.nexus.NexusFormatException.class

classes.org.forester.io.parsers.nexus.classes.org.forester.io.parsers.nexus.NexusPhylogeniesParser.class

classes.org.forester.io.parsers.nexus.classes.org.forester.io.parsers.nexus.PaupLogParser.class

classes.org.forester.io.parsers.nhx

classes.org.forester.io.parsers.nhx.classes.org.forester.io.parsers.nhx.NHXFormatException.class

classes.org.forester.io.parsers.nhx.classes.org.forester.io.parsers.nhx.NHXParser.class

classes.org.forester.io.parsers.nhx.classes.org.forester.io.parsers.nhx.NHXtags.class

classes.org.forester.io.parsers.phyloxml

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlException.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlHandler.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlMapping.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlParser$1.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlParser$PhyloXmlParserErrorHandler.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlParser.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.PhyloXmlUtil.class

classes.org.forester.io.parsers.phyloxml.classes.org.forester.io.parsers.phyloxml.XmlElement.class

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classes.org.forester.ws.wabi

classes.org.forester.ws.wabi.classes.org.forester.ws.wabi.RestUtil.class

classes.org.forester.ws.wabi.classes.org.forester.ws.wabi.TxSearch$RANKS.class

classes.org.forester.ws.wabi.classes.org.forester.ws.wabi.TxSearch$TAX_NAME_CLASS.class

classes.org.forester.ws.wabi.classes.org.forester.ws.wabi.TxSearch$TAX_RANK.class

classes.org.forester.ws.wabi.classes.org.forester.ws.wabi.TxSearch.class

classes.org.forester.ws.wabi.classes.org.forester.ws.wabi.WabiTools.class

org.forester.analysis

org.forester.analysis.org.forester.analysis.AncestralTaxonomyInference

org.forester.analysis.org.forester.analysis.AncestralTaxonomyInferenceException

org.forester.analysis.org.forester.analysis.TaxonomyDataManager

org.forester.application

org.forester.application.org.forester.application.confadd

org.forester.application.org.forester.application.count_support

org.forester.application.org.forester.application.decorator

org.forester.application.org.forester.application.gene_tree_preprocess

org.forester.application.org.forester.application.goac

org.forester.application.org.forester.application.gsdi

org.forester.application.org.forester.application.mcc

org.forester.application.org.forester.application.meta_ontologizer

org.forester.application.org.forester.application.nhx_too

org.forester.application.org.forester.application.nj

org.forester.application.org.forester.application.obo_tool

org.forester.application.org.forester.application.pccx

org.forester.application.org.forester.application.pfam2go_extractor

org.forester.application.org.forester.application.pfam_go

org.forester.application.org.forester.application.pfamacc2go

org.forester.application.org.forester.application.pfamacc2pfamid

org.forester.application.org.forester.application.phyloxml_converter

org.forester.application.org.forester.application.printAllSpecies

org.forester.application.org.forester.application.printSameOrder

org.forester.application.org.forester.application.rio

org.forester.application.org.forester.application.sdi_dir

org.forester.application.org.forester.application.sdi_r

org.forester.application.org.forester.application.strip

org.forester.application.org.forester.application.support_statistics

org.forester.application.org.forester.application.support_transfer

org.forester.application.org.forester.application.surf_paup

org.forester.application.org.forester.application.surfacing

org.forester.archaeopteryx

org.forester.archaeopteryx.org.forester.archaeopteryx.AptxUtil

org.forester.archaeopteryx.org.forester.archaeopteryx.Archaeopteryx

org.forester.archaeopteryx.org.forester.archaeopteryx.ArchaeopteryxA

org.forester.archaeopteryx.org.forester.archaeopteryx.ArchaeopteryxE

org.forester.archaeopteryx.org.forester.archaeopteryx.ColorSchemeChooser

org.forester.archaeopteryx.org.forester.archaeopteryx.Configuration

org.forester.archaeopteryx.org.forester.archaeopteryx.Constants

org.forester.archaeopteryx.org.forester.archaeopteryx.ControlPanel

org.forester.archaeopteryx.org.forester.archaeopteryx.FontChooser

org.forester.archaeopteryx.org.forester.archaeopteryx.MainFrame

org.forester.archaeopteryx.org.forester.archaeopteryx.MainFrameApplet

org.forester.archaeopteryx.org.forester.archaeopteryx.MainFrameApplication

org.forester.archaeopteryx.org.forester.archaeopteryx.MainPanel

org.forester.archaeopteryx.org.forester.archaeopteryx.MainPanelApplets

org.forester.archaeopteryx.org.forester.archaeopteryx.MouseListener

org.forester.archaeopteryx.org.forester.archaeopteryx.NodeEditPanel

org.forester.archaeopteryx.org.forester.archaeopteryx.NodeFrame

org.forester.archaeopteryx.org.forester.archaeopteryx.NodePanel

org.forester.archaeopteryx.org.forester.archaeopteryx.Options

org.forester.archaeopteryx.org.forester.archaeopteryx.PdfExporter

org.forester.archaeopteryx.org.forester.archaeopteryx.Printer

org.forester.archaeopteryx.org.forester.archaeopteryx.TextFrame

org.forester.archaeopteryx.org.forester.archaeopteryx.TreeColorSet

org.forester.archaeopteryx.org.forester.archaeopteryx.TreeFontSet

org.forester.archaeopteryx.org.forester.archaeopteryx.TreePanel

org.forester.archaeopteryx.org.forester.archaeopteryx.UrlTreeReader

org.forester.archaeopteryx.org.forester.archaeopteryx.WebLink

org.forester.archaeopteryx.phylogeny.data

org.forester.archaeopteryx.phylogeny.data.org.forester.archaeopteryx.phylogeny.data.RenderableDomainArchitecture

org.forester.archaeopteryx.phylogeny.data.org.forester.archaeopteryx.phylogeny.data.RenderablePhylogenyData

org.forester.archaeopteryx.phylogeny.data.org.forester.archaeopteryx.phylogeny.data.RenderableVector

org.forester.archaeopteryx.tools

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.AncestralTaxonomyInferrer

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.Blast

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.GoAnnotation

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.ImageLoader

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.InferenceManager

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.PhyloInferenceDialog

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.PhylogeneticInferenceOptions

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.PhylogeneticInferrer

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.ProcessPool

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.ProcessRunning

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.RunnableProcess

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.SequenceDataRetriver

org.forester.archaeopteryx.webservices

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.BasicPhylogeniesWebserviceClient

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.PhylogeniesWebserviceClient

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.WebserviceUtil

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.WebservicesManager

org.forester.datastructures

org.forester.datastructures.org.forester.datastructures.Queue

org.forester.development

org.forester.development.org.forester.development.AbstractRenderer

org.forester.development.org.forester.development.DevelopmentTools

org.forester.development.org.forester.development.Hello3d

org.forester.development.org.forester.development.HmmerRest

org.forester.development.org.forester.development.MsaRenderer

org.forester.development.org.forester.development.RandomThing

org.forester.development.org.forester.development.ResidueRenderer

org.forester.development.org.forester.development.Test

org.forester.development.org.forester.development.Time

org.forester.development.org.forester.development.neTest

org.forester.evoinference

org.forester.evoinference.org.forester.evoinference.TestPhylogenyReconstruction

org.forester.evoinference.distance

org.forester.evoinference.distance.org.forester.evoinference.distance.NeighborJoining

org.forester.evoinference.distance.org.forester.evoinference.distance.PairwiseDistanceCalculator

org.forester.evoinference.matrix.character

org.forester.evoinference.matrix.character.org.forester.evoinference.matrix.character.BasicCharacterStateMatrix

org.forester.evoinference.matrix.character.org.forester.evoinference.matrix.character.CharacterStateMatrix

org.forester.evoinference.matrix.character.org.forester.evoinference.matrix.character.DiscreteState

org.forester.evoinference.matrix.distance

org.forester.evoinference.matrix.distance.org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix

org.forester.evoinference.matrix.distance.org.forester.evoinference.matrix.distance.DistanceMatrix

org.forester.evoinference.parsimony

org.forester.evoinference.parsimony.org.forester.evoinference.parsimony.DolloParsimony

org.forester.evoinference.parsimony.org.forester.evoinference.parsimony.FitchParsimony

org.forester.evoinference.parsimony.org.forester.evoinference.parsimony.SankoffParsimony

org.forester.evoinference.tools

org.forester.evoinference.tools.org.forester.evoinference.tools.BootstrapResampler

org.forester.go

org.forester.go.org.forester.go.BasicGoRelationship

org.forester.go.org.forester.go.BasicGoSubset

org.forester.go.org.forester.go.BasicGoTerm

org.forester.go.org.forester.go.BasicGoXRef

org.forester.go.org.forester.go.GoId

org.forester.go.org.forester.go.GoNameSpace

org.forester.go.org.forester.go.GoRelationship

org.forester.go.org.forester.go.GoSubset

org.forester.go.org.forester.go.GoTerm

org.forester.go.org.forester.go.GoUtils

org.forester.go.org.forester.go.GoXRef

org.forester.go.org.forester.go.Mapping

org.forester.go.org.forester.go.OBOparser

org.forester.go.org.forester.go.PfamToGoMapping

org.forester.go.org.forester.go.PfamToGoParser

org.forester.go.org.forester.go.TestGo

org.forester.go.etc

org.forester.go.etc.org.forester.go.etc.MetaOntologizer

org.forester.go.etc.org.forester.go.etc.OntologizerResult

org.forester.io.parsers

org.forester.io.parsers.org.forester.io.parsers.FastaParser

org.forester.io.parsers.org.forester.io.parsers.GeneralMsaParser

org.forester.io.parsers.org.forester.io.parsers.HmmPfamOutputParser

org.forester.io.parsers.org.forester.io.parsers.HmmscanPerDomainTableParser

org.forester.io.parsers.org.forester.io.parsers.PhylogenyParser

org.forester.io.parsers.org.forester.io.parsers.SymmetricalDistanceMatrixParser

org.forester.io.parsers.nexus

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusBinaryStatesMatrixParser

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusCharactersParser

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusConstants

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusFormatException

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusPhylogeniesParser

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.PaupLogParser

org.forester.io.parsers.nhx

org.forester.io.parsers.nhx.org.forester.io.parsers.nhx.NHXFormatException

org.forester.io.parsers.nhx.org.forester.io.parsers.nhx.NHXParser

org.forester.io.parsers.nhx.org.forester.io.parsers.nhx.NHXtags

org.forester.io.parsers.phyloxml

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlException

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlHandler

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlMapping

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlParser

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlUtil

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.XmlElement

org.forester.io.parsers.phyloxml.data

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.AccessionParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.AnnotationParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.BinaryCharactersParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.BranchWidthParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ColorParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ConfidenceParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.DateParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.DistributionParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.DomainArchitectureParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.EventParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.IdentifierParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PhylogenyDataPhyloXmlParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PointParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PolygonParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PropertyParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ProteinDomainParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ReferenceParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.SequenceParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.SequenceRelationParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.TaxonomyParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.UriParser

org.forester.io.parsers.tol

org.forester.io.parsers.tol.org.forester.io.parsers.tol.TolParser

org.forester.io.parsers.tol.org.forester.io.parsers.tol.TolXmlHandler

org.forester.io.parsers.tol.org.forester.io.parsers.tol.TolXmlMapping

org.forester.io.parsers.util

org.forester.io.parsers.util.org.forester.io.parsers.util.ParserUtils

org.forester.io.parsers.util.org.forester.io.parsers.util.PhylogenyParserException

org.forester.io.writers

org.forester.io.writers.org.forester.io.writers.PhyloXmlNodeWriter

org.forester.io.writers.org.forester.io.writers.PhylogenyWriter

org.forester.io.writers.org.forester.io.writers.SequenceWriter

org.forester.msa

org.forester.msa.org.forester.msa.BasicMsa

org.forester.msa.org.forester.msa.Mafft

org.forester.msa.org.forester.msa.MafftOLD

org.forester.msa.org.forester.msa.Msa

org.forester.msa.org.forester.msa.MsaFormatException

org.forester.msa.org.forester.msa.MsaInferrer

org.forester.msa.org.forester.msa.MsaMethods

org.forester.msa.org.forester.msa.ResampleableMsa

org.forester.pccx

org.forester.pccx.org.forester.pccx.BasicExternalNodeBasedCoverageExtender

org.forester.pccx.org.forester.pccx.BranchCountingBasedScoringMethod

org.forester.pccx.org.forester.pccx.BranchLengthBasedScoringMethod

org.forester.pccx.org.forester.pccx.Coverage

org.forester.pccx.org.forester.pccx.CoverageCalculationMethod

org.forester.pccx.org.forester.pccx.CoverageCalculationOptions

org.forester.pccx.org.forester.pccx.CoverageCalculator

org.forester.pccx.org.forester.pccx.CoverageExtender

org.forester.pccx.org.forester.pccx.ExternalNodeBasedCoverage

org.forester.pccx.org.forester.pccx.ExternalNodeBasedCoverageMethod

org.forester.pccx.org.forester.pccx.ExternalNodeBasedCoverageMethodOptions

org.forester.pccx.org.forester.pccx.LogBranchLengthBasedScoringMethod

org.forester.pccx.org.forester.pccx.ModelingUtils

org.forester.pccx.org.forester.pccx.ScoringMethodForExternalNode

org.forester.pccx.org.forester.pccx.TestPccx

org.forester.phylogeny

org.forester.phylogeny.org.forester.phylogeny.Edge

org.forester.phylogeny.org.forester.phylogeny.Phylogeny

org.forester.phylogeny.org.forester.phylogeny.PhylogenyBranch

org.forester.phylogeny.org.forester.phylogeny.PhylogenyMethods

org.forester.phylogeny.org.forester.phylogeny.PhylogenyNode

org.forester.phylogeny.org.forester.phylogeny.PhylogenyNodeI

org.forester.phylogeny.data

org.forester.phylogeny.data.org.forester.phylogeny.data.Accession

org.forester.phylogeny.data.org.forester.phylogeny.data.Annotation

org.forester.phylogeny.data.org.forester.phylogeny.data.BinaryCharacters

org.forester.phylogeny.data.org.forester.phylogeny.data.BranchColor

org.forester.phylogeny.data.org.forester.phylogeny.data.BranchData

org.forester.phylogeny.data.org.forester.phylogeny.data.BranchWidth

org.forester.phylogeny.data.org.forester.phylogeny.data.Confidence

org.forester.phylogeny.data.org.forester.phylogeny.data.Date

org.forester.phylogeny.data.org.forester.phylogeny.data.Distribution

org.forester.phylogeny.data.org.forester.phylogeny.data.DomainArchitecture

org.forester.phylogeny.data.org.forester.phylogeny.data.Event

org.forester.phylogeny.data.org.forester.phylogeny.data.Identifier

org.forester.phylogeny.data.org.forester.phylogeny.data.MultipleUris

org.forester.phylogeny.data.org.forester.phylogeny.data.NodeData

org.forester.phylogeny.data.org.forester.phylogeny.data.NodeVisualization

org.forester.phylogeny.data.org.forester.phylogeny.data.PhylogenyData

org.forester.phylogeny.data.org.forester.phylogeny.data.PhylogenyDataUtil

org.forester.phylogeny.data.org.forester.phylogeny.data.Point

org.forester.phylogeny.data.org.forester.phylogeny.data.Polygon

org.forester.phylogeny.data.org.forester.phylogeny.data.PropertiesMap

org.forester.phylogeny.data.org.forester.phylogeny.data.Property

org.forester.phylogeny.data.org.forester.phylogeny.data.ProteinDomain

org.forester.phylogeny.data.org.forester.phylogeny.data.Reference

org.forester.phylogeny.data.org.forester.phylogeny.data.Sequence

org.forester.phylogeny.data.org.forester.phylogeny.data.SequenceRelation

org.forester.phylogeny.data.org.forester.phylogeny.data.Taxonomy

org.forester.phylogeny.data.org.forester.phylogeny.data.Uri

org.forester.phylogeny.factories

org.forester.phylogeny.factories.org.forester.phylogeny.factories.BasicPhylogenyFactory

org.forester.phylogeny.factories.org.forester.phylogeny.factories.ParserBasedPhylogenyFactory

org.forester.phylogeny.factories.org.forester.phylogeny.factories.PhylogenyFactory

org.forester.phylogeny.iterators

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.ExternalForwardIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.LevelOrderTreeIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PhylogenyNodeIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PostOrderStackObject

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PostorderTreeIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PreorderTreeIterator

org.forester.protein

org.forester.protein.org.forester.protein.BasicDomain

org.forester.protein.org.forester.protein.BasicProtein

org.forester.protein.org.forester.protein.BinaryDomainCombination

org.forester.protein.org.forester.protein.Domain

org.forester.protein.org.forester.protein.DomainId

org.forester.protein.org.forester.protein.Protein

org.forester.protein.org.forester.protein.ProteinId

org.forester.sdi

org.forester.sdi.org.forester.sdi.DistanceCalculator

org.forester.sdi.org.forester.sdi.GSDI

org.forester.sdi.org.forester.sdi.ORcount

org.forester.sdi.org.forester.sdi.RIO

org.forester.sdi.org.forester.sdi.RIOn

org.forester.sdi.org.forester.sdi.SDI

org.forester.sdi.org.forester.sdi.SDIException

org.forester.sdi.org.forester.sdi.SDIR

org.forester.sdi.org.forester.sdi.SDIse

org.forester.sdi.org.forester.sdi.TestGSDI

org.forester.sdi.org.forester.sdi.Tuplet

org.forester.sequence

org.forester.sequence.org.forester.sequence.BasicSequence

org.forester.sequence.org.forester.sequence.Sequence

org.forester.species

org.forester.species.org.forester.species.BasicSpecies

org.forester.species.org.forester.species.Species

org.forester.surfacing

org.forester.surfacing.org.forester.surfacing.AdjactantDirectedBinaryDomainCombination

org.forester.surfacing.org.forester.surfacing.AdjactantDirectedCombinableDomains

org.forester.surfacing.org.forester.surfacing.BasicBinaryDomainCombination

org.forester.surfacing.org.forester.surfacing.BasicCombinableDomains

org.forester.surfacing.org.forester.surfacing.BasicDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.BasicGenomeWideCombinableDomains

org.forester.surfacing.org.forester.surfacing.CombinableDomains

org.forester.surfacing.org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarity

org.forester.surfacing.org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.CountsBasedPairwiseDomainSimilarity

org.forester.surfacing.org.forester.surfacing.DirectedBinaryDomainCombination

org.forester.surfacing.org.forester.surfacing.DirectedCombinableDomains

org.forester.surfacing.org.forester.surfacing.DomainArchitectureBasedGenomeSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.DomainCountsBasedPairwiseSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.DomainCountsDifferenceUtil

org.forester.surfacing.org.forester.surfacing.DomainLengths

org.forester.surfacing.org.forester.surfacing.DomainLengthsTable

org.forester.surfacing.org.forester.surfacing.DomainParsimonyCalculator

org.forester.surfacing.org.forester.surfacing.DomainSimilarity

org.forester.surfacing.org.forester.surfacing.DomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.GenomeWideCombinableDomains

org.forester.surfacing.org.forester.surfacing.MappingResults

org.forester.surfacing.org.forester.surfacing.PairwiseDomainSimilarity

org.forester.surfacing.org.forester.surfacing.PairwiseDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.PairwiseGenomeComparator

org.forester.surfacing.org.forester.surfacing.PrintableDomainSimilarity

org.forester.surfacing.org.forester.surfacing.PrintableSpeciesSpecificDomainSimilariyData

org.forester.surfacing.org.forester.surfacing.ProteinCountsBasedPairwiseDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.SimpleDomain

org.forester.surfacing.org.forester.surfacing.SpeciesSpecificDomainSimilariyData

org.forester.surfacing.org.forester.surfacing.SurfacingConstants

org.forester.surfacing.org.forester.surfacing.SurfacingUtil

org.forester.surfacing.org.forester.surfacing.TestSurfacing

org.forester.test

org.forester.test.org.forester.test.Test

org.forester.test.examples

org.forester.test.examples.org.forester.test.examples.Example1

org.forester.test.examples.org.forester.test.examples.Example2

org.forester.test.examples.org.forester.test.examples.Example3

org.forester.test.examples.org.forester.test.examples.Example4

org.forester.test.examples.org.forester.test.examples.Example5

org.forester.tools

org.forester.tools.org.forester.tools.ConfidenceAssessor

org.forester.tools.org.forester.tools.PhylogenyDecorator

org.forester.tools.org.forester.tools.SupportCount

org.forester.tools.org.forester.tools.TreeSplitMatrix

org.forester.util

org.forester.util.org.forester.util.AsciiHistogram

org.forester.util.org.forester.util.BasicDescriptiveStatistics

org.forester.util.org.forester.util.BasicTable

org.forester.util.org.forester.util.BasicTableParser

org.forester.util.org.forester.util.CommandLineArguments

org.forester.util.org.forester.util.CommandProcessBuilder

org.forester.util.org.forester.util.DescriptiveStatistics

org.forester.util.org.forester.util.EasyWriter

org.forester.util.org.forester.util.ExternalProgram

org.forester.util.org.forester.util.FailedConditionCheckException

org.forester.util.org.forester.util.ForesterConstants

org.forester.util.org.forester.util.ForesterUtil

org.forester.util.org.forester.util.GeneralTable

org.forester.util.org.forester.util.IllegalFormatUseException

org.forester.util.org.forester.util.SequenceIdParser

org.forester.util.org.forester.util.SystemCommandExecutor

org.forester.util.org.forester.util.ThreadedStreamHandler

org.forester.util.org.forester.util.WindowsUtils

org.forester.ws.hmmer

org.forester.ws.hmmer.org.forester.ws.hmmer.Test

org.forester.ws.seqdb

org.forester.ws.seqdb.org.forester.ws.seqdb.DatabaseTools

org.forester.ws.seqdb.org.forester.ws.seqdb.EbiDbEntry

org.forester.ws.seqdb.org.forester.ws.seqdb.SequenceDatabaseEntry

org.forester.ws.seqdb.org.forester.ws.seqdb.SequenceDbWsTools

org.forester.ws.seqdb.org.forester.ws.seqdb.UniProtEntry

org.forester.ws.seqdb.org.forester.ws.seqdb.UniProtTaxonomy

org.forester.ws.uniprot

org.forester.ws.uniprot.org.forester.ws.uniprot.DatabaseTools

org.forester.ws.uniprot.org.forester.ws.uniprot.EbiDbEntry

org.forester.ws.uniprot.org.forester.ws.uniprot.SequenceDatabaseEntry

org.forester.ws.uniprot.org.forester.ws.uniprot.SequenceDbWsTools

org.forester.ws.uniprot.org.forester.ws.uniprot.UniProtEntry

org.forester.ws.uniprot.org.forester.ws.uniprot.UniProtTaxonomy

org.forester.ws.wabi

org.forester.ws.wabi.org.forester.ws.wabi.RestUtil

org.forester.ws.wabi.org.forester.ws.wabi.TxSearch

org.forester.ws.wabi.org.forester.ws.wabi.WabiTools

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