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• DomainLengthsTable.class

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classes.org.forester.surfacing.DomainLengthsTable.class Maven / Gradle / Ivy

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Ljava/text/DecimalFormat;
_domain_lengths
Ljava/util/SortedMap;
	Signature
\Ljava/util/SortedMap;
_species
Ljava/util/List;
0Ljava/util/List;

()V
Code
LineNumberTable
addDomainLengths
)(Lorg/forester/surfacing/DomainLengths;)V

StackMapTable
	addLength
A(Lorg/forester/protein/DomainId;Lorg/forester/species/Species;I)V

addLengths
(Ljava/util/List;)V???
3(Ljava/util/List;)V
)calculateMeanBasedStatisticsForAllSpecies
+()Lorg/forester/util/DescriptiveStatistics;?
%calculateMeanBasedStatisticsForDomain
J(Lorg/forester/protein/DomainId;)Lorg/forester/util/DescriptiveStatistics;
&calculateMeanBasedStatisticsForSpecies
I(Lorg/forester/species/Species;)Lorg/forester/util/DescriptiveStatistics;
(createMeanBasedStatisticsPerSpeciesTable
()Ljava/lang/StringBuilder;???
getDomainLengths
()Ljava/util/SortedMap;
^()Ljava/util/SortedMap;
G(Lorg/forester/protein/DomainId;)Lorg/forester/surfacing/DomainLengths;
getDomainLengthsList
()Ljava/util/List;?
:()Ljava/util/List;
getLengthStatistic
h(Lorg/forester/protein/DomainId;Lorg/forester/species/Species;)Lorg/forester/util/DescriptiveStatistics;

getSpecies
2()Ljava/util/List;


SourceFile
DomainLengthsTable.javaRS
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domain lengths for [????
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$org/forester/surfacing/DomainLengthsR?VW??Y?????????
org/forester/protein/Proteinw??????r
org/forester/protein/Domain????YZ
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org/forester/species/Speciesfg?????mp?b?????ug
SPECIES

	
MEAN
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MIN
MAX
MEDIAN???IJ????
java/lang/ArithmeticException
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java/text/DecimalFormat
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)org/forester/surfacing/DomainLengthsTable
java/lang/Object
java/util/Iterator
'org/forester/util/DescriptiveStatistics
java/util/List
getDomainId
!()Lorg/forester/protein/DomainId;
java/util/SortedMap
containsKey
(Ljava/lang/Object;)Z
append
-(Ljava/lang/String;)Ljava/lang/StringBuilder;
-(Ljava/lang/Object;)Ljava/lang/StringBuilder;
toString
()Ljava/lang/String;
(Ljava/lang/String;)V
put
8(Ljava/lang/Object;Ljava/lang/Object;)Ljava/lang/Object;
"(Lorg/forester/protein/DomainId;)V
get
&(Ljava/lang/Object;)Ljava/lang/Object;
"(Lorg/forester/species/Species;I)V
iterator
()Ljava/util/Iterator;
hasNext
()Z
next
()Ljava/lang/Object;
 ()Lorg/forester/species/Species;
contains
add
getProteinDomains
getTo
()I
getFrom
arithmeticMean
()D
addValue
(D)V
calculateMeanBasedStatistics
values
()Ljava/util/Collection;
java/util/Collection
isHasLengthStatistic
!(Lorg/forester/species/Species;)Z
org/forester/util/ForesterUtil
LINE_SEPARATOR
Ljava/lang/String;
format
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sampleStandardDeviation
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