Download forester JAR 1.038 with all dependencies

Files of the artifact forester version 1.038 from the group org.biojava.thirdparty.

Artifact forester
Group org.biojava.thirdparty
Version 1.038

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28 downloads

Source code of forester version 1.038

META-INF

META-INF.META-INF.MANIFEST.MF

org.forester.analysis

org.forester.analysis.org.forester.analysis.AncestralTaxonomyInference

org.forester.analysis.org.forester.analysis.AncestralTaxonomyInferenceException

org.forester.analysis.org.forester.analysis.TaxonomyDataManager

org.forester.application

org.forester.application.org.forester.application.annotator

org.forester.application.org.forester.application.check_fasta

org.forester.application.org.forester.application.confadd

org.forester.application.org.forester.application.count_support

org.forester.application.org.forester.application.decorator

org.forester.application.org.forester.application.decoratorX

org.forester.application.org.forester.application.dom_dup

org.forester.application.org.forester.application.fasta_split

org.forester.application.org.forester.application.gene_tree_preprocess

org.forester.application.org.forester.application.goac

org.forester.application.org.forester.application.gsdi

org.forester.application.org.forester.application.mcc

org.forester.application.org.forester.application.meta_ontologizer

org.forester.application.org.forester.application.msa_compactor

org.forester.application.org.forester.application.nj

org.forester.application.org.forester.application.obo_tool

org.forester.application.org.forester.application.pccx

org.forester.application.org.forester.application.pfam2go_extractor

org.forester.application.org.forester.application.pfam_go

org.forester.application.org.forester.application.pfamacc2go

org.forester.application.org.forester.application.pfamacc2pfamid

org.forester.application.org.forester.application.phylostrip

org.forester.application.org.forester.application.phyloxml_converter

org.forester.application.org.forester.application.rio

org.forester.application.org.forester.application.support_statistics

org.forester.application.org.forester.application.support_transfer

org.forester.application.org.forester.application.surfacing

org.forester.application.org.forester.application.table2fasta

org.forester.applications

org.forester.applications.org.forester.applications.aa

org.forester.applications.org.forester.applications.aaa

org.forester.applications.org.forester.applications.appearance_vs_count.class

org.forester.applications.org.forester.applications.core_chars.class

org.forester.applications.org.forester.applications.core_chars

org.forester.applications.org.forester.applications.domainloss_replacement.class

org.forester.applications.org.forester.applications.domainloss_replacement

org.forester.applications.org.forester.applications.genome_counts_for_once_appearing_dcs.class

org.forester.applications.org.forester.applications.genome_counts_for_once_appearing_dcs

org.forester.applications.org.forester.applications.get_distances

org.forester.applications.org.forester.applications.get_genome_counts_per_char.class

org.forester.applications.org.forester.applications.get_genome_counts_per_char

org.forester.applications.org.forester.applications.get_loss_nodes.class

org.forester.applications.org.forester.applications.get_loss_nodes

org.forester.applications.org.forester.applications.get_shared_chars.class

org.forester.applications.org.forester.applications.get_shared_chars

org.forester.applications.org.forester.applications.get_subtree_specific_chars.class

org.forester.applications.org.forester.applications.get_subtree_specific_chars

org.forester.applications.org.forester.applications.inverted_dcs.class

org.forester.applications.org.forester.applications.inverted_dcs

org.forester.applications.org.forester.applications.map_lengths

org.forester.applications.org.forester.applications.phylo2coloredgraphics

org.forester.applications.org.forester.applications.phylo2graphics

org.forester.applications.org.forester.applications.reinv_count.class

org.forester.applications.org.forester.applications.reinv_count

org.forester.applications.org.forester.applications.set_comparator.class

org.forester.applications.org.forester.applications.set_comparator

org.forester.applications.org.forester.applications.shared_chars_in_ext_nodes.class

org.forester.applications.org.forester.applications.shared_chars_in_ext_nodes

org.forester.applications.org.forester.applications.simple_node_processor.class

org.forester.applications.org.forester.applications.simple_node_processor

org.forester.applications.org.forester.applications.subtree_feature_count.class

org.forester.applications.org.forester.applications.subtree_feature_count

org.forester.applications.org.forester.applications.tax_code_cleaner.class

org.forester.applications.org.forester.applications.tax_code_cleaner

org.forester.applications.org.forester.applications.wiki_examples

org.forester.archaeopteryx

org.forester.archaeopteryx.org.forester.archaeopteryx.AptxUtil

org.forester.archaeopteryx.org.forester.archaeopteryx.Archaeopteryx

org.forester.archaeopteryx.org.forester.archaeopteryx.ArchaeopteryxA

org.forester.archaeopteryx.org.forester.archaeopteryx.ArchaeopteryxE

org.forester.archaeopteryx.org.forester.archaeopteryx.ColorSchemeChooser

org.forester.archaeopteryx.org.forester.archaeopteryx.Configuration

org.forester.archaeopteryx.org.forester.archaeopteryx.Constants

org.forester.archaeopteryx.org.forester.archaeopteryx.ControlPanel

org.forester.archaeopteryx.org.forester.archaeopteryx.FontChooser

org.forester.archaeopteryx.org.forester.archaeopteryx.MainFrame

org.forester.archaeopteryx.org.forester.archaeopteryx.MainFrameApplet

org.forester.archaeopteryx.org.forester.archaeopteryx.MainFrameApplication

org.forester.archaeopteryx.org.forester.archaeopteryx.MainPanel

org.forester.archaeopteryx.org.forester.archaeopteryx.MainPanelApplets

org.forester.archaeopteryx.org.forester.archaeopteryx.MouseListener

org.forester.archaeopteryx.org.forester.archaeopteryx.NodeEditPanel

org.forester.archaeopteryx.org.forester.archaeopteryx.NodeFrame

org.forester.archaeopteryx.org.forester.archaeopteryx.NodePanel

org.forester.archaeopteryx.org.forester.archaeopteryx.Options

org.forester.archaeopteryx.org.forester.archaeopteryx.PdfExporter

org.forester.archaeopteryx.org.forester.archaeopteryx.Printer

org.forester.archaeopteryx.org.forester.archaeopteryx.TextFrame

org.forester.archaeopteryx.org.forester.archaeopteryx.TreeColorSet

org.forester.archaeopteryx.org.forester.archaeopteryx.TreeFontSet

org.forester.archaeopteryx.org.forester.archaeopteryx.TreePanel

org.forester.archaeopteryx.org.forester.archaeopteryx.TreePanelUtil

org.forester.archaeopteryx.org.forester.archaeopteryx.UrlTreeReader

org.forester.archaeopteryx.phylogeny.data

org.forester.archaeopteryx.phylogeny.data.org.forester.archaeopteryx.phylogeny.data.RenderableDomainArchitecture

org.forester.archaeopteryx.phylogeny.data.org.forester.archaeopteryx.phylogeny.data.RenderableMsaSequence

org.forester.archaeopteryx.phylogeny.data.org.forester.archaeopteryx.phylogeny.data.RenderablePhylogenyData

org.forester.archaeopteryx.phylogeny.data.org.forester.archaeopteryx.phylogeny.data.RenderableVector

org.forester.archaeopteryx.tools

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.AncestralTaxonomyInferrer

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.Blast

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.ImageLoader

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.InferenceManager

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.PhyloInferenceDialog

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.PhylogeneticInferenceOptions

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.PhylogeneticInferrer

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.ProcessPool

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.ProcessRunning

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.RunnableProcess

org.forester.archaeopteryx.tools.org.forester.archaeopteryx.tools.SequenceDataRetriver

org.forester.archaeopteryx.webservices

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.BasicPhylogeniesWebserviceClient

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.PhylogeniesWebserviceClient

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.WebserviceUtil

org.forester.archaeopteryx.webservices.org.forester.archaeopteryx.webservices.WebservicesManager

org.forester.datastructures

org.forester.datastructures.org.forester.datastructures.IntMatrix

org.forester.datastructures.org.forester.datastructures.Queue

org.forester.development

org.forester.development.org.forester.development.AbstractRenderer

org.forester.development.org.forester.development.DevelopmentTools

org.forester.development.org.forester.development.Hello3d

org.forester.development.org.forester.development.HmmerRest

org.forester.development.org.forester.development.MsaRenderer

org.forester.development.org.forester.development.RandomThing

org.forester.development.org.forester.development.ResidueRenderer

org.forester.development.org.forester.development.Test

org.forester.development.org.forester.development.Time

org.forester.development.org.forester.development.neTest

org.forester.evoinference

org.forester.evoinference.org.forester.evoinference.TestPhylogenyReconstruction

org.forester.evoinference.distance

org.forester.evoinference.distance.org.forester.evoinference.distance.NeighborJoining

org.forester.evoinference.distance.org.forester.evoinference.distance.NeighborJoiningF

org.forester.evoinference.distance.org.forester.evoinference.distance.NeighborJoiningR

org.forester.evoinference.distance.org.forester.evoinference.distance.PairwiseDistanceCalculator

org.forester.evoinference.distance.org.forester.evoinference.distance.Sarray

org.forester.evoinference.distance.org.forester.evoinference.distance.Sset

org.forester.evoinference.matrix.character

org.forester.evoinference.matrix.character.org.forester.evoinference.matrix.character.BasicCharacterStateMatrix

org.forester.evoinference.matrix.character.org.forester.evoinference.matrix.character.CharacterStateMatrix

org.forester.evoinference.matrix.distance

org.forester.evoinference.matrix.distance.org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix

org.forester.evoinference.matrix.distance.org.forester.evoinference.matrix.distance.DistanceMatrix

org.forester.evoinference.parsimony

org.forester.evoinference.parsimony.org.forester.evoinference.parsimony.DolloParsimony

org.forester.evoinference.parsimony.org.forester.evoinference.parsimony.FitchParsimony

org.forester.evoinference.parsimony.org.forester.evoinference.parsimony.SankoffParsimony

org.forester.evoinference.tools

org.forester.evoinference.tools.org.forester.evoinference.tools.BootstrapResampler

org.forester.go

org.forester.go.org.forester.go.BasicGoRelationship

org.forester.go.org.forester.go.BasicGoSubset

org.forester.go.org.forester.go.BasicGoTerm

org.forester.go.org.forester.go.BasicGoXRef

org.forester.go.org.forester.go.GoId

org.forester.go.org.forester.go.GoNameSpace

org.forester.go.org.forester.go.GoRelationship

org.forester.go.org.forester.go.GoSubset

org.forester.go.org.forester.go.GoTerm

org.forester.go.org.forester.go.GoUtils

org.forester.go.org.forester.go.GoXRef

org.forester.go.org.forester.go.Mapping

org.forester.go.org.forester.go.OBOparser

org.forester.go.org.forester.go.PfamToGoMapping

org.forester.go.org.forester.go.PfamToGoParser

org.forester.go.org.forester.go.TestGo

org.forester.go.etc

org.forester.go.etc.org.forester.go.etc.MetaOntologizer

org.forester.go.etc.org.forester.go.etc.OntologizerResult

org.forester.io.parsers

org.forester.io.parsers.org.forester.io.parsers.FastaParser

org.forester.io.parsers.org.forester.io.parsers.GeneralMsaParser

org.forester.io.parsers.org.forester.io.parsers.HmmPfamOutputParser

org.forester.io.parsers.org.forester.io.parsers.HmmscanPerDomainTableParser

org.forester.io.parsers.org.forester.io.parsers.IteratingPhylogenyParser

org.forester.io.parsers.org.forester.io.parsers.PhylogenyParser

org.forester.io.parsers.org.forester.io.parsers.SymmetricalDistanceMatrixParser

org.forester.io.parsers.nexus

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusBinaryStatesMatrixParser

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusCharactersParser

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusConstants

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusFormatException

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.NexusPhylogeniesParser

org.forester.io.parsers.nexus.org.forester.io.parsers.nexus.PaupLogParser

org.forester.io.parsers.nhx

org.forester.io.parsers.nhx.org.forester.io.parsers.nhx.NHXFormatException

org.forester.io.parsers.nhx.org.forester.io.parsers.nhx.NHXParser

org.forester.io.parsers.nhx.org.forester.io.parsers.nhx.NHXtags

org.forester.io.parsers.phyloxml

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlException

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlHandler

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlMapping

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlParser

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.PhyloXmlUtil

org.forester.io.parsers.phyloxml.org.forester.io.parsers.phyloxml.XmlElement

org.forester.io.parsers.phyloxml.data

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.AccessionParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.AnnotationParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.BinaryCharactersParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.BranchWidthParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ColorParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ConfidenceParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.DateParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.DistributionParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.DomainArchitectureParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.EventParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.IdentifierParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PhylogenyDataPhyloXmlParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PointParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PolygonParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.PropertyParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ProteinDomainParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.ReferenceParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.SequenceParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.SequenceRelationParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.TaxonomyParser

org.forester.io.parsers.phyloxml.data.org.forester.io.parsers.phyloxml.data.UriParser

org.forester.io.parsers.tol

org.forester.io.parsers.tol.org.forester.io.parsers.tol.TolParser

org.forester.io.parsers.tol.org.forester.io.parsers.tol.TolXmlHandler

org.forester.io.parsers.tol.org.forester.io.parsers.tol.TolXmlMapping

org.forester.io.parsers.util

org.forester.io.parsers.util.org.forester.io.parsers.util.ParserUtils

org.forester.io.parsers.util.org.forester.io.parsers.util.PhylogenyParserException

org.forester.io.writers

org.forester.io.writers.org.forester.io.writers.PhyloXmlNodeWriter

org.forester.io.writers.org.forester.io.writers.PhylogenyWriter

org.forester.io.writers.org.forester.io.writers.SequenceWriter

org.forester.msa

org.forester.msa.org.forester.msa.BasicMsa

org.forester.msa.org.forester.msa.ClustalOmega

org.forester.msa.org.forester.msa.DeleteableMsa

org.forester.msa.org.forester.msa.Mafft

org.forester.msa.org.forester.msa.Msa

org.forester.msa.org.forester.msa.MsaFormatException

org.forester.msa.org.forester.msa.MsaInferrer

org.forester.msa.org.forester.msa.MsaMethods

org.forester.msa.org.forester.msa.ResampleableMsa

org.forester.msa_compactor

org.forester.msa_compactor.org.forester.msa_compactor.Chart

org.forester.msa_compactor.org.forester.msa_compactor.GapContribution

org.forester.msa_compactor.org.forester.msa_compactor.MsaCompactor

org.forester.msa_compactor.org.forester.msa_compactor.MsaProperties

org.forester.pccx

org.forester.pccx.org.forester.pccx.BasicExternalNodeBasedCoverageExtender

org.forester.pccx.org.forester.pccx.BranchCountingBasedScoringMethod

org.forester.pccx.org.forester.pccx.BranchLengthBasedScoringMethod

org.forester.pccx.org.forester.pccx.Coverage

org.forester.pccx.org.forester.pccx.CoverageCalculationMethod

org.forester.pccx.org.forester.pccx.CoverageCalculationOptions

org.forester.pccx.org.forester.pccx.CoverageCalculator

org.forester.pccx.org.forester.pccx.CoverageExtender

org.forester.pccx.org.forester.pccx.ExternalNodeBasedCoverage

org.forester.pccx.org.forester.pccx.ExternalNodeBasedCoverageMethod

org.forester.pccx.org.forester.pccx.ExternalNodeBasedCoverageMethodOptions

org.forester.pccx.org.forester.pccx.LogBranchLengthBasedScoringMethod

org.forester.pccx.org.forester.pccx.ModelingUtils

org.forester.pccx.org.forester.pccx.ScoringMethodForExternalNode

org.forester.pccx.org.forester.pccx.TestPccx

org.forester.phylogeny

org.forester.phylogeny.org.forester.phylogeny.Phylogeny

org.forester.phylogeny.org.forester.phylogeny.PhylogenyBranch

org.forester.phylogeny.org.forester.phylogeny.PhylogenyMethods

org.forester.phylogeny.org.forester.phylogeny.PhylogenyNode

org.forester.phylogeny.data

org.forester.phylogeny.data.org.forester.phylogeny.data.Accession

org.forester.phylogeny.data.org.forester.phylogeny.data.Annotation

org.forester.phylogeny.data.org.forester.phylogeny.data.BinaryCharacters

org.forester.phylogeny.data.org.forester.phylogeny.data.BranchColor

org.forester.phylogeny.data.org.forester.phylogeny.data.BranchData

org.forester.phylogeny.data.org.forester.phylogeny.data.BranchWidth

org.forester.phylogeny.data.org.forester.phylogeny.data.Confidence

org.forester.phylogeny.data.org.forester.phylogeny.data.Date

org.forester.phylogeny.data.org.forester.phylogeny.data.Distribution

org.forester.phylogeny.data.org.forester.phylogeny.data.DomainArchitecture

org.forester.phylogeny.data.org.forester.phylogeny.data.Event

org.forester.phylogeny.data.org.forester.phylogeny.data.Identifier

org.forester.phylogeny.data.org.forester.phylogeny.data.MultipleUris

org.forester.phylogeny.data.org.forester.phylogeny.data.NodeData

org.forester.phylogeny.data.org.forester.phylogeny.data.NodeDataField

org.forester.phylogeny.data.org.forester.phylogeny.data.NodeVisualData

org.forester.phylogeny.data.org.forester.phylogeny.data.PhylogenyData

org.forester.phylogeny.data.org.forester.phylogeny.data.PhylogenyDataUtil

org.forester.phylogeny.data.org.forester.phylogeny.data.Point

org.forester.phylogeny.data.org.forester.phylogeny.data.Polygon

org.forester.phylogeny.data.org.forester.phylogeny.data.PropertiesMap

org.forester.phylogeny.data.org.forester.phylogeny.data.Property

org.forester.phylogeny.data.org.forester.phylogeny.data.ProteinDomain

org.forester.phylogeny.data.org.forester.phylogeny.data.Reference

org.forester.phylogeny.data.org.forester.phylogeny.data.Sequence

org.forester.phylogeny.data.org.forester.phylogeny.data.SequenceRelation

org.forester.phylogeny.data.org.forester.phylogeny.data.Taxonomy

org.forester.phylogeny.data.org.forester.phylogeny.data.Uri

org.forester.phylogeny.factories

org.forester.phylogeny.factories.org.forester.phylogeny.factories.ParserBasedPhylogenyFactory

org.forester.phylogeny.factories.org.forester.phylogeny.factories.PhylogenyFactory

org.forester.phylogeny.iterators

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.ExternalForwardIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.LevelOrderTreeIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PhylogenyNodeIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PostOrderStackObject

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PostorderTreeIterator

org.forester.phylogeny.iterators.org.forester.phylogeny.iterators.PreorderTreeIterator

org.forester.protein

org.forester.protein.org.forester.protein.BasicDomain

org.forester.protein.org.forester.protein.BasicProtein

org.forester.protein.org.forester.protein.BinaryDomainCombination

org.forester.protein.org.forester.protein.Domain

org.forester.protein.org.forester.protein.Protein

org.forester.protein.org.forester.protein.ProteinId

org.forester.rio

org.forester.rio.org.forester.rio.RIO

org.forester.rio.org.forester.rio.RIOException

org.forester.rio.org.forester.rio.TestRIO

org.forester.sdi

org.forester.sdi.org.forester.sdi.GSDI

org.forester.sdi.org.forester.sdi.GSDII

org.forester.sdi.org.forester.sdi.GSDIR

org.forester.sdi.org.forester.sdi.GSDIsummaryResult

org.forester.sdi.org.forester.sdi.NodesLinkingResult

org.forester.sdi.org.forester.sdi.SDI

org.forester.sdi.org.forester.sdi.SDIException

org.forester.sdi.org.forester.sdi.SDIR

org.forester.sdi.org.forester.sdi.SDIutil

org.forester.sdi.org.forester.sdi.TestGSDI

org.forester.sequence

org.forester.sequence.org.forester.sequence.BasicSequence

org.forester.sequence.org.forester.sequence.MolecularSequence

org.forester.species

org.forester.species.org.forester.species.BasicSpecies

org.forester.species.org.forester.species.Species

org.forester.surfacing

org.forester.surfacing.org.forester.surfacing.AdjactantDirectedBinaryDomainCombination

org.forester.surfacing.org.forester.surfacing.AdjactantDirectedCombinableDomains

org.forester.surfacing.org.forester.surfacing.BasicBinaryDomainCombination

org.forester.surfacing.org.forester.surfacing.BasicCombinableDomains

org.forester.surfacing.org.forester.surfacing.BasicDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.BasicGenomeWideCombinableDomains

org.forester.surfacing.org.forester.surfacing.CombinableDomains

org.forester.surfacing.org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarity

org.forester.surfacing.org.forester.surfacing.CombinationsBasedPairwiseDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.CountsBasedPairwiseDomainSimilarity

org.forester.surfacing.org.forester.surfacing.DirectedBinaryDomainCombination

org.forester.surfacing.org.forester.surfacing.DirectedCombinableDomains

org.forester.surfacing.org.forester.surfacing.DomainArchitectureBasedGenomeSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.DomainCountsBasedPairwiseSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.DomainCountsDifferenceUtil

org.forester.surfacing.org.forester.surfacing.DomainLengths

org.forester.surfacing.org.forester.surfacing.DomainLengthsTable

org.forester.surfacing.org.forester.surfacing.DomainParsimonyCalculator

org.forester.surfacing.org.forester.surfacing.DomainSimilarity

org.forester.surfacing.org.forester.surfacing.DomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.GenomeWideCombinableDomains

org.forester.surfacing.org.forester.surfacing.MappingResults

org.forester.surfacing.org.forester.surfacing.PairwiseDomainSimilarity

org.forester.surfacing.org.forester.surfacing.PairwiseDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.PairwiseGenomeComparator

org.forester.surfacing.org.forester.surfacing.PrintableSpeciesSpecificDcData

org.forester.surfacing.org.forester.surfacing.ProteinCountsBasedPairwiseDomainSimilarityCalculator

org.forester.surfacing.org.forester.surfacing.SimpleDomain

org.forester.surfacing.org.forester.surfacing.SpeciesSpecificDcData

org.forester.surfacing.org.forester.surfacing.SurfacingConstants

org.forester.surfacing.org.forester.surfacing.SurfacingUtil

org.forester.surfacing.org.forester.surfacing.TestSurfacing

org.forester.test

org.forester.test.org.forester.test.Test

org.forester.test.examples

org.forester.test.examples.org.forester.test.examples.Example1

org.forester.test.examples.org.forester.test.examples.Example2

org.forester.test.examples.org.forester.test.examples.Example3

org.forester.test.examples.org.forester.test.examples.Example4

org.forester.test.examples.org.forester.test.examples.Example5

org.forester.tools

org.forester.tools.org.forester.tools.ConfidenceAssessor

org.forester.tools.org.forester.tools.PhylogenyDecorator

org.forester.tools.org.forester.tools.SupportCount

org.forester.tools.org.forester.tools.TreeSplitMatrix

org.forester.util

org.forester.util.org.forester.util.AsciiHistogram

org.forester.util.org.forester.util.BasicDescriptiveStatistics

org.forester.util.org.forester.util.BasicTable

org.forester.util.org.forester.util.BasicTableParser

org.forester.util.org.forester.util.CommandLineArguments

org.forester.util.org.forester.util.CommandProcessBuilder

org.forester.util.org.forester.util.DescriptiveStatistics

org.forester.util.org.forester.util.EasyWriter

org.forester.util.org.forester.util.ExternalProgram

org.forester.util.org.forester.util.FailedConditionCheckException

org.forester.util.org.forester.util.ForesterConstants

org.forester.util.org.forester.util.ForesterUtil

org.forester.util.org.forester.util.GeneralTable

org.forester.util.org.forester.util.IllegalFormatUseException

org.forester.util.org.forester.util.SequenceAccessionTools

org.forester.util.org.forester.util.StringInt

org.forester.util.org.forester.util.SystemCommandExecutor

org.forester.util.org.forester.util.TaxonomyColors

org.forester.util.org.forester.util.TaxonomyGroups

org.forester.util.org.forester.util.TaxonomyUtil

org.forester.util.org.forester.util.ThreadedStreamHandler

org.forester.util.org.forester.util.WindowsUtils

org.forester.ws.hmmer

org.forester.ws.hmmer.org.forester.ws.hmmer.Test

org.forester.ws.seqdb

org.forester.ws.seqdb.org.forester.ws.seqdb.EbiDbEntry

org.forester.ws.seqdb.org.forester.ws.seqdb.SequenceDatabaseEntry

org.forester.ws.seqdb.org.forester.ws.seqdb.SequenceDbWsTools

org.forester.ws.seqdb.org.forester.ws.seqdb.UniProtEntry

org.forester.ws.seqdb.org.forester.ws.seqdb.UniProtTaxonomy

org.forester.ws.wabi

org.forester.ws.wabi.org.forester.ws.wabi.RestUtil

org.forester.ws.wabi.org.forester.ws.wabi.TxSearch

org.forester.ws.wabi.org.forester.ws.wabi.WabiTools

.phyloxml.xsd

.synth_look_and_feel_1.xml