org.forester.phylogeny.data.BranchWidth Maven / Gradle / Ivy
// $Id:
// FORESTER -- software libraries and applications
// for evolutionary biology research and applications.
//
// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.phylogeny.data;
import java.io.IOException;
import java.io.Writer;
import org.forester.io.parsers.phyloxml.PhyloXmlMapping;
import org.forester.util.ForesterUtil;
public class BranchWidth implements PhylogenyData {
public final static double BRANCH_WIDTH_DEFAULT_VALUE = 1.0;
private final double _value;
public BranchWidth() {
_value = BRANCH_WIDTH_DEFAULT_VALUE;
}
public BranchWidth( final double value ) {
_value = value;
}
@Override
public StringBuffer asSimpleText() {
return new StringBuffer( getValue() + "" );
}
@Override
public StringBuffer asText() {
return asSimpleText();
}
@Override
public PhylogenyData copy() {
return new BranchWidth( getValue() );
}
public double getValue() {
return _value;
}
@Override
public boolean isEqual( final PhylogenyData data ) {
return getValue() == ( ( BranchWidth ) data ).getValue();
}
@Override
public StringBuffer toNHX() {
throw new UnsupportedOperationException();
}
@Override
public void toPhyloXML( final Writer w, final int level, final String indentation ) throws IOException {
w.write( ForesterUtil.LINE_SEPARATOR );
w.write( indentation );
PhylogenyDataUtil.appendElement( w, PhyloXmlMapping.WIDTH, getValue() + "" );
}
@Override
public String toString() {
return asText().toString();
}
}