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The protein structure modules of BioJava.

There is a newer version: 7.2.2




  
    
  
  
  Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
  
  FATCAT reference:
   Yuzhen Ye & Adam Godzik (2003)
Flexible structure alignment by chaining aligned fragment pairs allowing twists.  
Bioinformatics vol.19 suppl. 2. ii246-ii255. 
  
  
  see also:
    Andreas Prlic; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
Pre-calculated protein structure alignments at the RCSB PDB website
Bioinformatics 26: 2983-2985