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The protein structure modules of BioJava.
There is a newer version: 7.2.2
/*
 *                    BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 * created at Mar 4, 2008
 */
package org.biojava.nbio.structure.io.mmcif;

import org.biojava.nbio.structure.io.FileParsingParameters;
import org.biojava.nbio.structure.io.mmcif.model.*;

import java.util.List;

/** An interface for the events triggered by a MMcifParser.
 * The Consumer listens to the events and builds up the protein structure.
 *
 * @author Andreas Prlic
 *  @since 1.7
 *
 */
public interface MMcifConsumer {
	/** called at start of document
	 *
	 */
	public void documentStart();

	/** called at end of document
	 *
	 */
	public void documentEnd();


	/** A new AtomSite record has been read. Contains the Atom data
	 *
	 * @param atom
	 */
	public void newAtomSite(AtomSite atom);
	public void newEntity(Entity entity);
	public void newEntityPolySeq(EntityPolySeq epolseq);
	public void newStructAsym(StructAsym sasym);
	public void setStruct(Struct struct);
	public void newDatabasePDBrev(DatabasePDBrev dbrev);
	public void newDatabasePDBrevRecord(DatabasePdbrevRecord dbrev);
	public void newDatabasePDBremark(DatabasePDBremark remark);
	public void newExptl(Exptl exptl);
	public void newCell(Cell cell);
	public void newSymmetry(Symmetry symmetry);
	public void newStructNcsOper(StructNcsOper sNcsOper);
	public void newStructRef(StructRef sref);
	public void newStructRefSeq(StructRefSeq sref);
	public void newStructRefSeqDif(StructRefSeqDif sref);
	public void newStructSite(StructSite sref);
	public void newStructSiteGen(StructSiteGen sref);
	public void newPdbxPolySeqScheme(PdbxPolySeqScheme ppss);
	public void newPdbxNonPolyScheme(PdbxNonPolyScheme ppss);
	public void newPdbxEntityNonPoly(PdbxEntityNonPoly pen);
	public void newStructKeywords(StructKeywords kw);
	public void newRefine(Refine r);
	public void newChemComp(ChemComp c);
	public void newChemCompDescriptor(ChemCompDescriptor ccd);
	public void newPdbxStructOperList(PdbxStructOperList structOper);
	public void newPdbxStrucAssembly(PdbxStructAssembly strucAssembly);
	public void newPdbxStrucAssemblyGen(PdbxStructAssemblyGen strucAssembly);
	public void newChemCompAtom(ChemCompAtom atom);
	public void newPdbxChemCompIndentifier(PdbxChemCompIdentifier id);
	public void newChemCompBond(ChemCompBond bond);
	public void newPdbxChemCompDescriptor(PdbxChemCompDescriptor desc);
	public void newEntitySrcGen(EntitySrcGen entitySrcGen);
	public void newEntitySrcNat(EntitySrcNat entitySrcNat);
	public void newEntitySrcSyn(EntitySrcSyn entitySrcSyn);
	public void newStructConn(StructConn structConn);

	/** AuditAuthor contains the info from the PDB-AUTHOR records.
	 *
	 * @param aa
	 */
	public void newAuditAuthor(AuditAuthor aa);

	/** This method is called if no particular handler for the provided cif category
	 * has been implemented so far.
	 * @param category The category that is being processed.
	 * @param loopFields the fields of this category.
	 * @param lineData the data that is being provided.
	 */
	public void newGenericData(String category, List loopFields, List lineData);

	public void setFileParsingParameters(FileParsingParameters params);
	public FileParsingParameters getFileParsingParameters();








}