
org.biopax.paxtools.normalizer.synonymap.json Maven / Gradle / Ivy
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A BioPAX Normalizer and modified off-line MiriamLink (MIRIAM, EBI, OLS)
The newest version!
{
"NCBI GENE": "ncbigene",
"ENTREZ GENE": "ncbigene",
"NCBI GI": "ncbigi",
"ENTREZ GI": "ncbigi",
"GI": "ncbigi",
"PUBCHEM": "pubchem.compound",
"NCBI PUBCHEM": "pubchem.compound",
"CID": "pubchem.compound",
"SID": "pubchem.substance",
"PMID": "pubmed",
"MEDLINE": "pubmed",
"SWISS-PROT": "uniprot",
"UNIPROTKB": "uniprot",
"REACTOME PROTEIN": "uniprot",
"PIR": "uniprot",
"PIR-SSD": "uniprot",
"UM-BBD": "umbbd.compound",
"UMBBD": "umbbd.compound",
"REFSEQ PROTEIN": "refseq",
"HGNC SYMBOL": "hgnc.symbol",
"GENE SYMBOL": "hgnc.symbol",
"NEWT": "ncbitaxon",
"NCBI GENBANK": "insdc",
"GENBANK": "insdc",
"DDBJ": "insdc",
"EMBL-BANK": "insdc",
"EMBL": "insdc",
"PROTEIN GENBANK IDENTIFIER": "genpept",
"ENTREZ PROTEIN SEQUENCE": "genpept",
"COMPOUND": "kegg.compound",
"LIGAND": "kegg.compound",
"KEGG GENOMES": "kegg.genome",
"KEGG ORGANISM": "kegg.genome",
"KEGG GENE": "kegg.genes",
"AFFYMETRIX": "affy.probeset",
"REACTOME STABLE ID": "reactome",
"CELL TYPE ONTOLOGY": "cl",
"EC NUMBER": "eccode",
"MIRBASE SEQUENCE": "mirbase",
"GENBANK GENE DATABASE": "genbank",
"GENBANK PROTEIN DATABASE": "genbank",
"GENBANK IDENTIFIER": "genbank"
}
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