Download org.biopax.paxtools JAR files with all dependencies

paxtools-core from group org.biopax.paxtools (version 6.0.0)

Paxtools core library includes the BioPAX object model and interfaces, the default implementation and extras: reflection-based class factories and property editors/accessors, some inverse properties (e.g., xrefOf, componentOf), traversal and file (I/O) utilities.

Group: org.biopax.paxtools Artifact: paxtools-core
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Artifact paxtools-core
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies collections-generic, commons-lang3,
There are maybe transitive dependencies!

paxtools-query from group org.biopax.paxtools (version 6.0.0)

BioPAX graph-theoretic querying - for finding paths between molecules, or identifying molecules that are reachable through specific paths, using the BioPAX pathway data model.

Group: org.biopax.paxtools Artifact: paxtools-query
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Artifact paxtools-query
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL http://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!

psimi-converter from group org.biopax.paxtools (version 6.0.0)

Converts PSI-MI or PCI-MITAB v2.5 files to BioPAX

Group: org.biopax.paxtools Artifact: psimi-converter
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Artifact psimi-converter
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies paxtools-core, psimitab,
There are maybe transitive dependencies!

paxtools-trove from group org.biopax.paxtools (version 6.0.0)

Trove4j based collections provider for BioPAX model

Group: org.biopax.paxtools Artifact: paxtools-trove
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Artifact paxtools-trove
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies paxtools-core, trove4j,
There are maybe transitive dependencies!

sbgn-converter from group org.biopax.paxtools (version 6.0.0)

To convert a BioPAX L3 model to SBGN-ML (SBGN PD), and optionally align.

Group: org.biopax.paxtools Artifact: sbgn-converter
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Artifact sbgn-converter
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 3
Dependencies paxtools-core, libsbgn, chilay-sbgn,
There are maybe transitive dependencies!

pattern from group org.biopax.paxtools (version 6.0.0)

BioPAX Pattern Search library. Also, converts BioPAX model to SIF (simple binary interactions) text format.

Group: org.biopax.paxtools Artifact: pattern
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Artifact pattern
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies paxtools-core, normalizer,
There are maybe transitive dependencies!

paxtools-console from group org.biopax.paxtools (version 6.0.0)

Paxtools Console Application and Examples

Group: org.biopax.paxtools Artifact: paxtools-console
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1 downloads

Artifact paxtools-console
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 10
Dependencies paxtools-core, psimi-converter, gsea-converter, sbgn-converter, paxtools-query, pattern, normalizer, fluent-hc, httpmime, json-simple,
There are maybe transitive dependencies!

json-converter from group org.biopax.paxtools (version 6.0.0)

Converts BioPAX model/file to or from JSON-LD format

Group: org.biopax.paxtools Artifact: json-converter
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14 downloads

Artifact json-converter
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 2
Dependencies apache-jena-libs, paxtools-core,
There are maybe transitive dependencies!

gsea-converter from group org.biopax.paxtools (version 6.0.0)

Converts data to the GESA (.gmt) format.

Group: org.biopax.paxtools Artifact: gsea-converter
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Artifact gsea-converter
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!

normalizer from group org.biopax.paxtools (version 6.0.0)

A BioPAX Normalizer and modified off-line MiriamLink (MIRIAM, EBI, OLS)

Group: org.biopax.paxtools Artifact: normalizer
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Artifact normalizer
Group org.biopax.paxtools
Version 6.0.0
Last update 25. May 2024
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
There are maybe transitive dependencies!

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