Download org.biopax.paxtools JAR files with all dependencies

Paxtools is a Java library that allows software to read, write, analyze and manipulate BioPAX models. Paxtools provide a consistent, fully implemented, validating BioPAX API that significantly reduces development time of oftware that require programmatic access to BioPAX. Paxtools is modular, lightweight and platform independent to be easily embedded into applications.

Paxtools Maven archetype - sample Java project to quickly start using Paxtools library and BioPAX data.

BioPAX full-text indexing and searching (Lucene based)

Provides an additional I/O support for BioPAX OWL models using Jena library.

Converts a BioPAX model to binary SIF (simple interaction format) or extended binary SIF by inferring the interactions in the model and describing them in terms of simple interactions. This includes a set of BioPAX-specific inference rules implemented on top of paxtools-core.